{"id":"W4377820756","doi":"10.3390/f14061070","title":"High-Throughput DNA Metabarcoding of Stem Sections from Trees with Cavities Describes Fungal Communities Associated with Variable Wood Decay, Position on Stem and Tree Species","year":2023,"lang":"en","type":"article","venue":"Forests","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Berkeley Charitable Foundation","keywords":"Biology; Tree (set theory); Sampling (signal processing); DNA sequencing; Taxon; Environmental DNA; Botany; Ecology; DNA; Biodiversity; Mathematics; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005731545,0.000390174,0.0003648321,0.0009287432,0.0007703137,0.0008941189,0.0003115058,0.0003695178,0.0003667706],"category_scores_gemma":[0.001182402,0.0002004927,0.0004797914,0.001024919,0.0003956346,0.0002634477,0.0003569102,0.0003065051,0.0001905252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004981146,"about_ca_system_score_gemma":0.0006942783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02478774,"about_ca_topic_score_gemma":0.1042285,"domain_scores_codex":[0.9995922,0.00005163224,0.0000225449,0.0001912392,0.00009224591,0.00005016094],"domain_scores_gemma":[0.9990672,0.0003138278,0.0002955901,0.00008302834,0.0001725193,0.00006771892],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002460782,0.0000685916,0.2314014,0.0002710822,0.0001733721,0.0002069741,0.001000875,0.002397991,0.7340204,0.0002616959,0.0001628011,0.02978874],"study_design_scores_gemma":[0.000009057985,0.0001624898,0.9214051,0.00004726288,0.0001507318,0.0005075166,0.0006594857,0.00959666,0.06480101,0.0003820049,0.002246185,0.00003245946],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9832814,0.0004732523,0.01426667,0.0000345479,0.000005086494,0.00003523299,0.001332239,0.00007722243,0.0004942761],"genre_scores_gemma":[0.9732203,0.0003127549,0.02315729,0.00004345028,0.000003100633,0.00002764463,0.00272821,0.00002533108,0.0004819583],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02478774,"threshold_uncertainty_score":0.04928696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289515258286757,"score_gpt":0.2082035263863607,"score_spread":0.1853083738034932,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}