{"id":"W4377820756","doi":"10.3390/f14061070","title":"High-Throughput DNA Metabarcoding of Stem Sections from Trees with Cavities Describes Fungal Communities Associated with Variable Wood Decay, Position on Stem and Tree Species","year":2023,"lang":"en","type":"article","venue":"Forests","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Berkeley Charitable Foundation","keywords":"Biology; Tree (set theory); Sampling (signal processing); DNA sequencing; Taxon; Environmental DNA; Botany; Ecology; DNA; Biodiversity; Mathematics; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006320052,0.0001713808,0.0002167713,0.00007524053,0.0002002555,0.00004739085,0.00009162218,0.00008258533,0.000005924382],"category_scores_gemma":[0.000005950603,0.0001323594,0.00003923524,0.0001527078,0.000126057,0.00001889241,0.0000599593,0.0000753383,0.000001198185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001390937,"about_ca_system_score_gemma":0.00004961987,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003368152,"about_ca_topic_score_gemma":0.01377859,"domain_scores_codex":[0.9992242,0.00009026631,0.0001414105,0.0001837833,0.0001591168,0.0002012206],"domain_scores_gemma":[0.9994796,0.00009861259,0.00009151129,0.0002006066,0.00007387259,0.00005577817],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001294686,0.0003509462,0.339163,0.00008855329,0.001387823,0.00007133347,0.001032353,0.002623713,0.6475912,0.004659914,0.001297675,0.0004388803],"study_design_scores_gemma":[0.00123133,0.001577845,0.8226856,0.0004144762,0.0003022807,0.00002158736,0.004376307,0.0001730093,0.1684924,0.0001562889,0.0002041582,0.0003647093],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945147,0.0003214669,0.0002095732,0.00001975533,0.00004947967,0.0001291031,0.00431972,0.00004432041,0.0003918515],"genre_scores_gemma":[0.9972361,0.0001354665,0.0001340348,0.00002084396,0.00005815142,0.00002688479,0.001742011,0.00002282615,0.0006236929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4835226,"threshold_uncertainty_score":0.7688776,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289515258286757,"score_gpt":0.2082035263863607,"score_spread":0.1853083738034932,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}