{"id":"W4378171916","doi":"10.1002/prot.26513","title":"Biochemical, structural, and kinetic characterization of <scp>PP<sub>i</sub></scp>‐dependent phosphoenolpyruvate carboxykinase from <i>Propionibacterium freudenreichii</i>","year":2023,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan; Canadian Light Source","keywords":"Phosphoenolpyruvate carboxykinase; GTP'; Enzyme; Nucleotide; Allosteric regulation; Biochemistry; Phosphoenolpyruvate carboxylase; Chemistry; Stereochemistry; Propionibacterium freudenreichii; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001450595,0.0003885626,0.0004017517,0.0001845038,0.000266465,0.0002201213,0.0001580344,0.0003034275,0.00005768114],"category_scores_gemma":[0.0001224351,0.000310017,0.00005886565,0.0004677923,0.0002101877,0.0005533623,0.000189297,0.0002534935,0.00002390584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003477912,"about_ca_system_score_gemma":0.00004809875,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006123722,"about_ca_topic_score_gemma":0.00001520001,"domain_scores_codex":[0.9980009,0.00004887906,0.0006892006,0.0004051238,0.0004582335,0.0003976574],"domain_scores_gemma":[0.9987114,0.00006153835,0.0005113768,0.0003653583,0.0001754252,0.0001748901],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005317801,0.000007588645,0.0007017089,0.000270389,0.00002771854,0.000001471932,0.0006711055,0.00001136484,0.9932429,0.0001666281,0.0001675507,0.004678463],"study_design_scores_gemma":[0.0008086774,0.0002283635,0.03488372,0.00007263147,0.00009377558,0.00002099627,0.0003561462,0.001847191,0.9596269,0.001034108,0.0008341644,0.0001932972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953172,0.0001994137,0.001599462,0.00004848039,0.001131925,0.0006806497,0.0006996275,0.0002376655,0.00008557844],"genre_scores_gemma":[0.9966189,0.0004220343,0.001489736,0.0001929861,0.0002565437,0.0000295432,0.0009204575,0.00003330699,0.00003652794],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03418201,"threshold_uncertainty_score":0.9999352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005594107426285511,"score_gpt":0.1851253273949119,"score_spread":0.1795312199686264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}