{"id":"W4378171916","doi":"10.1002/prot.26513","title":"Biochemical, structural, and kinetic characterization of <scp>PP<sub>i</sub></scp>‐dependent phosphoenolpyruvate carboxykinase from <i>Propionibacterium freudenreichii</i>","year":2023,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan; Canadian Light Source","keywords":"Phosphoenolpyruvate carboxykinase; GTP'; Enzyme; Nucleotide; Allosteric regulation; Biochemistry; Phosphoenolpyruvate carboxylase; Chemistry; Stereochemistry; Propionibacterium freudenreichii; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001380028,0.0003189046,0.0001975996,0.0002340211,0.0001351587,0.0004173894,0.0003061336,0.0002238332,0.0004075201],"category_scores_gemma":[0.0003292381,0.0001536784,0.0003026916,0.0005110698,0.000173428,0.0002753886,0.0001508005,0.000541369,0.0002967072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000347673,"about_ca_system_score_gemma":0.0003026518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004036839,"about_ca_topic_score_gemma":0.002502159,"domain_scores_codex":[0.9998612,0.00001290287,0.00001069314,0.00003100493,0.00005521605,0.00002886099],"domain_scores_gemma":[0.9998042,0.00002546109,0.00004682288,0.00002182104,0.00005697428,0.00004472406],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000788535,0.00003143433,0.0006859684,0.00003223986,0.000004791977,0.00008892734,0.00003337199,0.0001663747,0.997753,0.00004418976,0.00004589617,0.00103494],"study_design_scores_gemma":[0.00001267297,0.0002124097,0.03341699,0.000006011613,0.00002626446,0.0005313681,0.0001260348,0.00200642,0.9593993,0.00007573479,0.004168565,0.00001810174],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946983,0.0008755,0.001724281,0.0001381066,0.00002072887,0.00002929127,0.001155385,0.00003549436,0.001322939],"genre_scores_gemma":[0.9874961,0.0006689421,0.002848296,0.00004491934,0.00001553231,0.00002633906,0.006924109,0.00003491672,0.001940832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004036839,"threshold_uncertainty_score":0.008026719,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005594107426285511,"score_gpt":0.1851253273949119,"score_spread":0.1795312199686264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}