{"id":"W4378228840","doi":"10.3390/microorganisms11061372","title":"Apple Root Microbiome as Indicator of Plant Adaptation to Apple Replant Diseased Soils","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Dalhousie University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Agricultural Research Service; U.S. Department of Agriculture","keywords":"Orchard; Biology; Malus; Actinobacteria; Microbiome; Soil water; Botany; Apple tree; Microorganism; Firmicutes; Soil microbiology; Horticulture; Agronomy; 16S ribosomal RNA; Ecology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001171023,0.0001707282,0.0001819393,0.0001228428,0.00007676017,0.00002065593,0.0002247174,0.0001116955,0.00006189469],"category_scores_gemma":[0.00004519193,0.0001657008,0.00009241547,0.0002450766,0.00003862256,0.000003240034,0.0001335662,0.00004374459,0.0004156168],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001274061,"about_ca_system_score_gemma":0.0001228032,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004682065,"about_ca_topic_score_gemma":0.00004080852,"domain_scores_codex":[0.9988869,0.00003407729,0.0002446761,0.000405367,0.0001318095,0.0002971837],"domain_scores_gemma":[0.9993277,0.00001326503,0.00009408003,0.0003328958,0.00003695348,0.0001951611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001637642,0.00007901562,0.001164126,0.00003930741,0.00004397971,0.00002346534,0.0001486855,0.00004071758,0.9668769,0.00002481723,0.03122177,0.00017346],"study_design_scores_gemma":[0.0004099669,0.0002131938,0.007481676,0.00002266353,0.00003795779,0.00002937119,0.0002807938,0.00002204365,0.9336414,0.00002620839,0.0575849,0.0002497708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9755795,0.0002305986,0.0006228663,0.00009249567,0.0001129478,0.0003393548,0.02291689,0.00005071418,0.00005462725],"genre_scores_gemma":[0.9817582,0.00004898931,0.0004370026,0.0003033588,0.0001137917,0.00004064323,0.01680958,0.00003842342,0.0004500282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03323545,"threshold_uncertainty_score":0.6757083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008452674970697339,"score_gpt":0.2186579925811139,"score_spread":0.2102053176104166,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}