{"id":"W4378515792","doi":"10.3390/v15051116","title":"Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome","year":2023,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"University of Waterloo; University of Toronto; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Phycological Society of America","keywords":"Biology; Gene; Transcriptome; Computational biology; Genome; Host (biology); Genetics; Function (biology); Clade; Evolutionary biology; Gene expression; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005642184,0.00006285027,0.0001061198,0.000128951,0.00007645403,0.00001054752,0.00004740238,0.00002703096,0.00516134],"category_scores_gemma":[0.00001089025,0.0000586293,0.00005761189,0.0006856901,0.00008813124,0.0001350854,0.000191684,0.00004305699,0.0003373605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003519748,"about_ca_system_score_gemma":0.000004823264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001416827,"about_ca_topic_score_gemma":0.0003606035,"domain_scores_codex":[0.9995118,0.00001496632,0.0001287736,0.0001583372,0.00007434133,0.0001118129],"domain_scores_gemma":[0.9997857,0.00003507008,0.00004561785,0.0000932989,0.000006261032,0.00003405869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001843404,0.00003002338,0.0682861,0.000003107231,0.0001233558,0.000002004889,0.00004081723,0.0004297781,0.9284714,0.00002147795,0.001168366,0.001405099],"study_design_scores_gemma":[0.00006597999,0.00001759873,0.9715372,0.000001986831,0.0001330268,0.000003376885,0.00003394072,0.0003673066,0.02060153,0.00003604755,0.007137365,0.0000646509],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987289,0.00003910809,0.00003546089,0.00004628275,0.00007818663,0.00005563329,0.000132096,0.0000373285,0.0008469559],"genre_scores_gemma":[0.9981316,0.00009945618,0.0005718083,0.000144875,0.00002795809,0.00001027519,0.0000905066,0.000007115418,0.0009164233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9078699,"threshold_uncertainty_score":0.9957481,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02577676210471736,"score_gpt":0.2527077294853428,"score_spread":0.2269309673806255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}