{"id":"W4378597107","doi":"10.1093/ecco-jcc/jjad092","title":"Bacterial Oncotraits Rather than Spatial Organization Are Associated with Dysplasia in Ulcerative Colitis","year":2023,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"KWF Kankerbestrijding; Deutsche Forschungsgemeinschaft","keywords":"Interquartile range; Gastroenterology; Odds ratio; Dysplasia; Internal medicine; Ulcerative colitis; Medicine; Microbiology; Biology; Pathology; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005372044,0.000331705,0.0002866009,0.0008183277,0.0003529285,0.0006575309,0.0002891421,0.0005736707,0.001388337],"category_scores_gemma":[0.001734182,0.0003094861,0.0004108194,0.0009266285,0.000254549,0.0003656315,0.0006179924,0.0005129918,0.0001623324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001688597,"about_ca_system_score_gemma":0.0001833496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002060625,"about_ca_topic_score_gemma":0.00296102,"domain_scores_codex":[0.9995777,0.0001158152,0.00004940379,0.0001215523,0.00007807305,0.00005737289],"domain_scores_gemma":[0.9985669,0.0001830419,0.000840336,0.0001016121,0.0001219859,0.0001861868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000235764,0.00001612304,0.9967172,0.00002610674,0.00006687513,0.00005420131,0.00003011612,0.00004242952,0.001281725,0.00001045867,0.00002964322,0.001489533],"study_design_scores_gemma":[0.000002499011,0.00005773739,0.999204,0.000009851729,0.00003670855,0.000243856,0.00007212565,0.0001878477,0.00008941715,0.00002222189,0.00007191451,0.000001780144],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982216,0.001180399,0.0002088473,0.0000358318,0.000005207232,0.0000037507,0.0001241113,0.00000506653,0.0002151118],"genre_scores_gemma":[0.9994942,0.0001648836,0.0001659035,0.000005560526,0.000004325383,0.000002496573,0.0000890533,0.000001417088,0.00007225663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002060625,"threshold_uncertainty_score":0.004644454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007558923359630285,"score_gpt":0.2365183916301182,"score_spread":0.2289594682704879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}