{"id":"W4378650478","doi":"10.3390/ijms24119440","title":"Single Nematode Transcriptomic Analysis, Using Long-Read Technology, Reveals Two Novel Virulence Gene Candidates in the Soybean Cyst Nematode, Heterodera glycines","year":2023,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Agriculture and Agri-Food Canada","funders":"Government of Canada; Canadian Field Crop Research Alliance; Genome Canada; Syngenta Canada; Saskatchewan Pulse Growers; Grain Farmers of Ontario; Génome Québec","keywords":"Soybean cyst nematode; Effector; Heterodera; Biology; Virulence; Transcriptome; Nematode; Genetics; Gene; Alternative splicing; Gene expression profiling; Gene expression; Cell biology; Messenger RNA; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001144455,0.0003189949,0.0002493228,0.0002934693,0.0001265337,0.0002882954,0.00009413341,0.0002158479,0.0004508834],"category_scores_gemma":[0.0001683435,0.0001008793,0.0002536345,0.0002179992,0.0001395768,0.0001875682,0.0001536991,0.0002915996,0.0001842257],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001640664,"about_ca_system_score_gemma":0.0001574995,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003715552,"about_ca_topic_score_gemma":0.001115436,"domain_scores_codex":[0.9999033,0.000005681723,0.000005559742,0.00004271036,0.00002882933,0.00001385515],"domain_scores_gemma":[0.9998807,0.00002917482,0.00004497686,0.000007214431,0.00001797768,0.00001996125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004392131,0.000008023518,0.001180653,0.00002140499,0.00000357409,0.00003401445,0.00001836339,0.00002746303,0.9978696,0.00001144188,0.000008953135,0.0007726031],"study_design_scores_gemma":[0.00001532926,0.0005757428,0.2855844,0.00002456378,0.00009677437,0.0007079465,0.0002632409,0.003744732,0.7069491,0.0001622572,0.001856038,0.00001982531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934777,0.0003334884,0.003884245,0.00003441962,0.00001186081,0.00002174822,0.001819076,0.00005802391,0.0003594675],"genre_scores_gemma":[0.9840634,0.0003538064,0.009086779,0.00006830852,0.00001057533,0.00005646571,0.004507171,0.00003051691,0.001823046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004508834,"threshold_uncertainty_score":0.001508355,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03681115384327704,"score_gpt":0.2957759845189587,"score_spread":0.2589648306756817,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}