{"id":"W4378672888","doi":"10.1101/2023.05.24.23290482","title":"Bacterial genome wide association study substantiates <i>papGII</i> of <i>Escherichia coli</i> as a patient independent driver of urosepsis","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Universität Zürich; Eidgenössische Technische Hochschule Zürich; École Polytechnique Fédérale de Lausanne; Universität Basel; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Escherichia coli; Microbiology; Urine; Virulence; Virulence factor; Biology; Genome; Urinary system; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00115145,0.0003748798,0.0004472502,0.000590711,0.0004528651,0.001183488,0.0003842238,0.0008525521,0.004548641],"category_scores_gemma":[0.003078739,0.0001976317,0.0009938456,0.001024878,0.0004163425,0.0002558693,0.0006019212,0.001327983,0.000540424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000149066,"about_ca_system_score_gemma":0.0002589883,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001601791,"about_ca_topic_score_gemma":0.001656204,"domain_scores_codex":[0.9989423,0.0003458125,0.00008085098,0.0003319328,0.0001336624,0.0001654541],"domain_scores_gemma":[0.9976312,0.0009486628,0.0006373963,0.0003231656,0.0001646107,0.0002949392],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009243258,0.00005729275,0.9797342,0.00009120985,0.0008999351,0.0008281022,0.00009630465,0.0001425912,0.009096957,0.0002320284,0.001377931,0.006518991],"study_design_scores_gemma":[0.00002245403,0.0001632118,0.9936309,0.00003098269,0.0004956569,0.001338812,0.0001443316,0.0006619954,0.001435526,0.0002828418,0.001782958,0.00001033636],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918019,0.001608621,0.001574094,0.000908801,0.00007859225,0.0000103639,0.00215311,0.00005515829,0.001809478],"genre_scores_gemma":[0.9980479,0.0002036565,0.0004263725,0.0001539739,0.00004652059,0.00000424544,0.0007310998,0.0000154002,0.0003707281],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004548641,"threshold_uncertainty_score":0.01521671,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02344294978669882,"score_gpt":0.2671102236589624,"score_spread":0.2436672738722636,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}