{"id":"W4378715997","doi":"10.1038/s41467-023-38415-7","title":"Rapid evolution of A(H5N1) influenza viruses after intercontinental spread to North America","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":237,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Canadian Science Centre for Human and Animal Health","funders":"National Institute of Allergy and Infectious Diseases; American Lebanese Syrian Associated Charities; St. Jude Children's Research Hospital; U.S. Department of Health and Human Services; National Institutes of Health; National Science Foundation","keywords":"Influenza A virus subtype H5N1; Virology; Pandemic; 2019-20 coronavirus outbreak; Influenza A virus; Coronavirus disease 2019 (COVID-19); Viral evolution; Biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Medicine; Virus; Genetics; Genome; Outbreak; Gene; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001539794,0.0001496038,0.000297938,0.0004927067,0.0001587616,0.00001346127,0.0006196271,0.0001342265,0.00006348536],"category_scores_gemma":[0.0013303,0.0001324938,0.0001284764,0.001556512,0.0003177,0.0001143772,0.001042561,0.0008216369,0.0005277689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001824575,"about_ca_system_score_gemma":0.0001075114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001852021,"about_ca_topic_score_gemma":0.0009465484,"domain_scores_codex":[0.9986637,0.000114741,0.0003567064,0.0002003061,0.0003727177,0.0002918874],"domain_scores_gemma":[0.997242,0.0003006969,0.00008787965,0.001747859,0.0004922365,0.0001293075],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001827827,0.0009044186,0.8188313,0.0002511973,0.0008391737,0.00002081913,0.008528064,0.00004950378,0.02808847,0.001320992,0.09807536,0.04126283],"study_design_scores_gemma":[0.0004398578,0.0001475019,0.5671224,0.0001071841,0.00004667138,0.000002273856,0.0005396479,0.00009717824,0.0005822912,0.00001966442,0.4307914,0.000103923],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733797,0.01501165,0.00004367068,0.005164389,0.0001387286,0.0009487441,0.0002852425,0.0002761816,0.0047517],"genre_scores_gemma":[0.9930576,0.0009479424,0.00232848,0.003105677,0.00005813176,0.0002541099,0.00006792561,0.00002506782,0.0001550826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.332716,"threshold_uncertainty_score":0.6783577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0774153098656355,"score_gpt":0.4069324111888758,"score_spread":0.3295171013232403,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}