{"id":"W4378976294","doi":"10.1126/science.abn7829","title":"A global catalog of whole-genome diversity from 233 primate species","year":2023,"lang":"en","type":"article","venue":"Science","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":214,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary; Université de Montréal","funders":"Agencia Estatal de Investigación; National Medical Research Council; Natural Environment Research Council; Medical Research Council; National Institute on Aging; Fundación Bancaria Caixa d'Estalvis i Pensions de Barcelona; Novo Nordisk Fonden; Fundação de Amparo à Pesquisa do Estado do Amazonas; Ministry of Science and Technology; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Vetenskapsrådet; Primate Conservation; Vienna Science and Technology Fund; Conselho Nacional de Desenvolvimento Científico e Tecnológico; National Geographic Society; Canada Research Chairs; Council of Scientific and Industrial Research, India; European Commission; Deutsche Forschungsgemeinschaft; National Institutes of Health; Margot Marsh Biodiversity Foundation; Sight Research UK; Centres de Recerca de Catalunya; National Science Foundation; Department of Biotechnology, Ministry of Science and Technology, India; UK Research and Innovation; National Research Foundation; Leakey Foundation; Indian Institute of Science; Generalitat de Catalunya; Eunice Kennedy Shriver National Institute of Child Health and Human Development; Rufford Foundation; National Research Foundation Singapore","keywords":"Biology; Evolutionary biology; Genetic diversity; Primate; Clade; Context (archaeology); Biodiversity; Population; Phylogenetics; Ecology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001467392,0.00006375479,0.00007966693,0.00002382565,0.0002016381,0.00001186693,0.0003716018,0.00002528362,0.000004127799],"category_scores_gemma":[0.00003905781,0.0000589485,0.00003534978,0.0003130384,0.000438267,0.000001006016,0.001202995,0.00001397968,0.00002703124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001343113,"about_ca_system_score_gemma":0.00006205509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001943044,"about_ca_topic_score_gemma":0.0001152047,"domain_scores_codex":[0.9993228,0.000006756797,0.00007914154,0.0002546322,0.0001501727,0.0001865027],"domain_scores_gemma":[0.9996158,0.000004228437,0.00003990214,0.0002308799,0.00006329626,0.00004582047],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006239597,0.000007763082,0.07836041,0.000003300883,0.00001012865,8.766555e-7,0.0001289446,0.00005535126,0.9209555,0.0000724027,0.0001818789,0.000217153],"study_design_scores_gemma":[0.0001301943,0.0000619439,0.92805,0.000002571136,0.000006967346,9.131934e-7,0.0002185697,0.00001667264,0.05782871,0.0007012471,0.01288655,0.00009564741],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973632,0.0005228315,0.00004676371,0.00009162358,0.0001575362,0.00004991527,0.0005332571,0.000004176783,0.001230734],"genre_scores_gemma":[0.9992141,0.0001714939,0.000230417,0.00004242186,0.00004752337,0.000001293413,0.00004508744,0.000002147647,0.0002455002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8631268,"threshold_uncertainty_score":0.240385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0182080743124057,"score_gpt":0.2457489585802142,"score_spread":0.2275408842678085,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}