{"id":"W4379376261","doi":"10.15252/embr.202256678","title":"Arms race between anti‐silencing and RdDM in noncoding regions of transposable elements","year":2023,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Society for the Promotion of Science; National Institute of Genetics; Human Frontier Science Program","keywords":"Biology; DNA methylation; Transposable element; Epigenetics; Gene silencing; Chromatin; Genetics; Histone; Arabidopsis; Genome; DNA; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002634521,0.00006242238,0.0001463567,0.00001895922,0.00007189966,0.00001200814,0.00004460675,0.00004171248,0.00005375627],"category_scores_gemma":[0.00003414438,0.00002808566,0.00003450748,0.0004401783,0.00002018434,0.00005248895,0.00002882556,0.00004804214,0.000003241922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007932321,"about_ca_system_score_gemma":0.000007665653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001850965,"about_ca_topic_score_gemma":0.0003214551,"domain_scores_codex":[0.999204,0.00001970993,0.0003056574,0.0001888941,0.0001216646,0.0001600147],"domain_scores_gemma":[0.9997025,0.00008274433,0.0001065358,0.00004362789,0.00001931123,0.00004535456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[6.514557e-7,0.00001653892,0.9139098,0.000007778269,0.000006032787,0.00004248852,0.000449562,0.00002287536,0.08190547,0.00001956274,0.00007896703,0.003540258],"study_design_scores_gemma":[0.00006593268,0.00003970709,0.9895645,0.00004996277,0.000009561255,0.00001566425,0.0004145832,0.0000968033,0.006891953,0.001625385,0.001145615,0.00008032798],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998434,0.00004817694,0.000001895116,0.0008999673,0.00005957522,0.0001167975,0.0000133848,0.00003067899,0.0003955366],"genre_scores_gemma":[0.9995297,0.00007502716,0.0001007165,0.0000121436,0.00006846213,0.000006481084,0.00004515306,6.102177e-7,0.0001617549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07565469,"threshold_uncertainty_score":0.11453,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03030302797996802,"score_gpt":0.2482754386144242,"score_spread":0.2179724106344562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}