{"id":"W4379553510","doi":"10.1002/fft2.259","title":"Conjoint transcriptomic and proteogenomic analysis of quality formation in various <i>Porphyra dentata</i> harvests: Photosynthesis acts as a stressor","year":2023,"lang":"en","type":"article","venue":"Food Frontiers","topic":"Algal biology and biofuel production","field":"Energy","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences; Central Public-interest Scientific Institution Basal Research Fund, Chinese Academy of Fishery Sciences","keywords":"Proteogenomics; Biology; Transcriptome; Phycocyanin; Porphyra; Gene; Photosynthesis; Proteomics; Computational biology; RNA-Seq; Botany; Gene expression; Genetics; Evolutionary biology; Cyanobacteria; Algae","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004333792,0.0001417657,0.0003962247,0.000474182,0.0000632407,0.00001764489,0.0001079567,0.0001504551,0.00003631237],"category_scores_gemma":[0.00008656983,0.0001332957,0.0001179542,0.000766353,0.0001138246,0.0002492452,0.00002331149,0.0001130849,0.00001583442],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008053197,"about_ca_system_score_gemma":0.00002523658,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0015051,"about_ca_topic_score_gemma":0.004176285,"domain_scores_codex":[0.9987172,0.0001976183,0.0004344464,0.0003029541,0.0001181413,0.0002296099],"domain_scores_gemma":[0.9994814,0.00003114734,0.000191844,0.0002122895,0.0000320897,0.00005125546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003243468,0.0004242655,0.05947844,0.0006186677,0.005730513,0.00002679953,0.01166974,0.003813385,0.8743697,0.004041404,0.001219283,0.03536427],"study_design_scores_gemma":[0.002510985,0.000764221,0.3561367,0.0000618399,0.001461983,0.00001038138,0.00607308,0.004175185,0.6169094,0.00729532,0.003846075,0.0007547332],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979213,0.0003195416,0.0005043215,0.0002819083,0.0001833018,0.0003350944,0.0001192705,0.00006798533,0.0002672173],"genre_scores_gemma":[0.9990307,0.0001629602,0.0003579588,0.00007019217,0.00002030713,0.0000524442,0.0002227547,0.00001052935,0.00007215564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2966583,"threshold_uncertainty_score":0.5435639,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02245434520716811,"score_gpt":0.2516259087488815,"score_spread":0.2291715635417134,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}