{"id":"W4380151007","doi":"10.1101/2023.06.07.544063","title":"zol &amp; fai: large-scale targeted detection and evolutionary investigation of gene clusters","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Scale (ratio); Gene; Computational biology; Evolutionary biology; Biology; Genetics; Geography; Cartography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009666005,0.001136395,0.0009174887,0.001998588,0.0006755412,0.001798069,0.001865381,0.0009187025,0.004825907],"category_scores_gemma":[0.001966749,0.0006905885,0.001057815,0.001288765,0.0008717577,0.001552375,0.002089301,0.001170488,0.002268699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007323299,"about_ca_system_score_gemma":0.0008097235,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001338835,"about_ca_topic_score_gemma":0.002281384,"domain_scores_codex":[0.9993533,0.00007762526,0.00003167062,0.0002280976,0.0002542044,0.0000550117],"domain_scores_gemma":[0.9991369,0.000312745,0.0001512501,0.0002705321,0.00005413325,0.00007455777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001641799,0.000215596,0.01595488,0.002071284,0.0007584089,0.0009603219,0.0007055053,0.04166007,0.4138667,0.03988865,0.09258281,0.3896941],"study_design_scores_gemma":[0.0003595644,0.0002760316,0.01829288,0.00009295644,0.0001881037,0.001673905,0.0002278966,0.5312039,0.2565811,0.05128723,0.1394849,0.0003314127],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.03516898,0.000748256,0.8666953,0.0005336558,0.0001767802,0.0001762629,0.01525235,0.07757042,0.003677986],"genre_scores_gemma":[0.09991225,0.0005086683,0.8772111,0.0002923752,0.00008445811,0.0004486531,0.01496867,0.003777058,0.002796757],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004825907,"threshold_uncertainty_score":0.01614434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01373867017329439,"score_gpt":0.2084888512854699,"score_spread":0.1947501811121755,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}