{"id":"W4380185328","doi":"10.1038/s42003-023-04989-7","title":"Transposons contribute to the acquisition of cell type-specific cis-elements in the brain","year":2023,"lang":"en","type":"article","venue":"Communications Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Institute of Genetics; Japan Agency for Medical Research and Development","keywords":"Transposable element; Biology; Transcription factor; Gene; Genetics; Cell type; Glutamatergic; Computational biology; Cell; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004390271,0.00005080811,0.00007573783,0.00001596692,0.0002312515,0.00001164377,0.000958377,0.00004506994,0.0001075308],"category_scores_gemma":[0.00003533144,0.00001640815,0.00003687042,0.0009370389,0.00007397312,0.00001405658,0.0001173917,0.00007840804,0.0001221002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000789869,"about_ca_system_score_gemma":0.000005882911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007299719,"about_ca_topic_score_gemma":0.002013288,"domain_scores_codex":[0.9992144,0.0003208088,0.0001875109,0.00009653843,0.00004834546,0.0001324309],"domain_scores_gemma":[0.9987947,0.0008025384,0.00004589091,0.0002839665,0.00005527481,0.0000176689],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000364914,0.0003391586,0.01657731,0.000003507248,0.00001851306,5.380481e-7,0.003041677,0.00004847826,0.8983641,0.03589671,0.0119215,0.03375207],"study_design_scores_gemma":[0.0001705651,0.0002444137,0.3925965,0.000007506705,0.000006843286,0.000001350794,0.001010231,0.0001615815,0.001064159,0.003959737,0.6006962,0.00008086723],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8596885,0.0004135883,0.00002166154,0.1379423,0.00007306959,0.0003989533,0.0002717965,0.00002426946,0.001165937],"genre_scores_gemma":[0.9979472,0.0004025405,0.0001175731,0.0007695307,0.00003592624,0.00006207442,0.0005902969,4.177041e-7,0.00007448337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8972999,"threshold_uncertainty_score":0.1780919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05467096028057432,"score_gpt":0.2864616183190616,"score_spread":0.2317906580384873,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}