{"id":"W4380570760","doi":"10.1111/tan.15125","title":"Discovery of three novel <scp>HLA‐DPA1</scp> alleles, <i>HLA‐DPA1*01:147N</i>, <i>01:03:47</i>, and <i>02:106</i> using next‐generation sequencing","year":2023,"lang":"en","type":"article","venue":"HLA","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Human leukocyte antigen; Allele; Biology; Genetics; Null allele; DNA sequencing; Gene; Computational biology; Antigen","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004720953,0.0003820925,0.0005021786,0.0002972324,0.0004327028,0.000122046,0.0002150634,0.0004332145,0.0001296938],"category_scores_gemma":[0.0002197028,0.0003700564,0.0001927582,0.0004541742,0.000226509,0.000919106,0.0002026081,0.0005215467,0.0003736191],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001432059,"about_ca_system_score_gemma":0.0001585216,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007618861,"about_ca_topic_score_gemma":0.0002822063,"domain_scores_codex":[0.997839,0.0001573231,0.0006983687,0.0005922478,0.0001178559,0.0005952095],"domain_scores_gemma":[0.9986832,0.0002869779,0.0003806605,0.0004715113,0.0001362586,0.00004139027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005635638,0.0000830726,0.0006602441,0.00005741267,0.0001505219,0.000005620426,0.000509159,0.0003493193,0.9701099,0.0007324109,0.02645879,0.0008271743],"study_design_scores_gemma":[0.002514304,0.00034662,0.002091286,0.0002130261,0.0002006988,0.000314371,0.002171725,0.004544627,0.8819975,0.0001320911,0.1050959,0.0003778456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9808664,0.003110847,0.006734041,0.0001506469,0.005230297,0.0004055187,0.00004838252,0.0002296546,0.003224254],"genre_scores_gemma":[0.9836759,0.0007739993,0.0003439863,0.0007665316,0.0002968154,0.00002879401,0.000770241,0.00007452992,0.0132692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08811237,"threshold_uncertainty_score":0.9998751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07355087604036811,"score_gpt":0.2503229853176778,"score_spread":0.1767721092773097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}