{"id":"W4380606732","doi":"10.1101/2023.06.14.544933","title":"Phage predation, disease severity and pathogen genetic diversity in cholera patients","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Université de Montréal; McGill University; McGill Genome Centre","funders":"Emerging Pathogens Institute, University of Florida; Ministry of Health and Family Welfare; Children's Miracle Network Hospitals; University of Florida; International Centre for Diarrhoeal Disease Research, Bangladesh; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Institutes of Health; National Science Foundation","keywords":"Diversity (politics); Predation; Pathogen; Genetic diversity; Cholera; Biology; Disease; Microbiology; Ecology; Medicine; Internal medicine; Political science; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004551102,0.0001406129,0.000229638,0.0003332289,0.0003865875,0.0006211252,0.0001411076,0.0004342986,0.003765355],"category_scores_gemma":[0.001861437,0.00009730859,0.0001996979,0.0004658994,0.0002256058,0.0002500384,0.0004256068,0.0003437079,0.0005418864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003516757,"about_ca_system_score_gemma":0.0002707684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004521209,"about_ca_topic_score_gemma":0.004433183,"domain_scores_codex":[0.9997632,0.00006132108,0.00002495066,0.00006284066,0.00004655994,0.00004116631],"domain_scores_gemma":[0.9991593,0.0002111471,0.0002612214,0.00005109857,0.0001463091,0.0001709353],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002388894,0.00002066934,0.9919968,0.000065803,0.00003894147,0.0001361196,0.0002995151,0.00003981035,0.002287203,0.00004249032,0.002308433,0.002525153],"study_design_scores_gemma":[0.000006077851,0.00009837569,0.996169,0.00002930963,0.00002522709,0.0004506788,0.0008331689,0.00009023114,0.0005443461,0.00008355998,0.001660502,0.0000095832],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946563,0.0005463318,0.0001599533,0.0008552829,0.00003548196,0.000007225481,0.002912684,0.000009707383,0.0008169815],"genre_scores_gemma":[0.9977103,0.0002065447,0.0001879137,0.0002126515,0.00002489316,0.000007029317,0.0009094193,0.000005131754,0.0007361219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004521209,"threshold_uncertainty_score":0.01259631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0170523334950588,"score_gpt":0.2322905039405381,"score_spread":0.2152381704454793,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}