{"id":"W4380853846","doi":"10.1016/j.chom.2023.05.003","title":"The coronavirus recombination pathway","year":2023,"lang":"en","type":"review","venue":"Cell Host & Microbe","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Science Foundation","keywords":"Recombination; Biology; Coronavirus; Mechanism (biology); Homologous recombination; Recombinant DNA; Transmission (telecommunications); Genome; FLP-FRT recombination; Computational biology; Coronavirus disease 2019 (COVID-19); Genetics; Evolutionary biology; Genetic recombination; Gene; Computer science; Physics; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007833377,0.0004062248,0.001050624,0.0002132403,0.0002587722,0.0001121463,0.0005296273,0.0004165244,0.00002709278],"category_scores_gemma":[0.0001732595,0.0002608774,0.0005903098,0.0006723163,0.0001391485,0.0000363456,0.0002640358,0.0009442532,0.007044041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004055706,"about_ca_system_score_gemma":0.001121345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008196934,"about_ca_topic_score_gemma":0.00002978614,"domain_scores_codex":[0.9977041,0.000193459,0.0005965523,0.0005468451,0.0003842837,0.0005747481],"domain_scores_gemma":[0.9980295,0.0006514947,0.0002451622,0.0008559153,0.0001630483,0.00005483891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001842035,0.0001023092,0.000007811572,0.01162238,0.0001026175,0.000144903,0.00005286599,1.41907e-9,0.001702048,0.00005702094,0.008733992,0.9774556],"study_design_scores_gemma":[0.0004215595,0.0001183332,0.000005530809,0.004522479,0.0002737168,0.00005978814,0.0000286762,0.000001146259,0.002653904,0.00003504355,0.9916295,0.0002503705],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001099993,0.9875218,0.000004422393,0.00007336853,0.00079019,0.00153922,0.00004601205,0.0001517999,0.009763171],"genre_scores_gemma":[0.000004625801,0.9885282,0.00001294285,0.002673414,0.0003164711,0.0002159351,0.00009580424,0.0001555638,0.007997067],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9828954,"threshold_uncertainty_score":0.9999843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1163369628864495,"score_gpt":0.4033680428178974,"score_spread":0.2870310799314479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}