{"id":"W4380869524","doi":"10.1093/bioinformatics/btad381","title":"GRETTA: an R package for mapping <i>in silico</i> genetic interaction and essentiality networks","year":2023,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Genome British Columbia; University of British Columbia","funders":"University of British Columbia; University of Alabama at Birmingham; Canada Research Chairs; Broad Institute; University of Alabama; Canadian Institutes of Health Research; Canada's Michael Smith Genome Sciences Centre","keywords":"DECIPHER; In silico; Computer science; MIT License; Documentation; Computational biology; Source code; Biology; Genetics; Gene; Software; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004414839,0.003801093,0.003029351,0.002647839,0.001007628,0.004050622,0.0041185,0.001628087,0.1040851],"category_scores_gemma":[0.02184621,0.002070755,0.004397782,0.002146788,0.001107701,0.002401192,0.003667343,0.004872154,0.08599849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009083542,"about_ca_system_score_gemma":0.003643376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004188244,"about_ca_topic_score_gemma":0.005426141,"domain_scores_codex":[0.9974968,0.0008634561,0.0002130364,0.0007327344,0.0004813039,0.0002126147],"domain_scores_gemma":[0.990928,0.006193225,0.0007260296,0.001144816,0.0006806978,0.0003272156],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005939556,0.00006808824,0.005626528,0.004475769,0.001694122,0.0006018305,0.0004451387,0.01339528,0.005769528,0.01670819,0.8892944,0.06132732],"study_design_scores_gemma":[0.0006733597,0.0001875722,0.007272936,0.0008636841,0.0008449765,0.001252451,0.0001721788,0.07225652,0.009864274,0.09361846,0.8126004,0.0003931434],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002966682,0.001389578,0.3205671,0.001041522,0.0006343251,0.000311192,0.1704985,0.495689,0.006902],"genre_scores_gemma":[0.03937605,0.001754071,0.3722673,0.002075215,0.0003477086,0.003020831,0.2387265,0.3297426,0.01268976],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1040851,"threshold_uncertainty_score":0.3481992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01750650609130439,"score_gpt":0.2602235399463445,"score_spread":0.2427170338550401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}