{"id":"W4380871380","doi":"10.1038/s41588-023-01419-6","title":"A complete telomere-to-telomere assembly of the maize genome","year":2023,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":315,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Key Research and Development Program of China; Institute of Genetics and Developmental Biology, Chinese Academy of Sciences; Chinese Academy of Sciences; Institute of Genetics; National Natural Science Foundation of China","keywords":"Biology; Genome; Telomere; Centromere; Transposable element; Contig; Genetics; Nanopore sequencing; Chromosome; Repeated sequence; Computational biology; DNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001088968,0.0001168765,0.000142231,0.00001635855,0.0001765974,0.00002461067,0.0004902401,0.000181172,0.0001704789],"category_scores_gemma":[0.0000574462,0.00003998617,0.000111514,0.001294966,0.00003760167,0.00001124902,0.0002401582,0.0002053581,0.0001533508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001280174,"about_ca_system_score_gemma":0.0000148509,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001336756,"about_ca_topic_score_gemma":0.0002783462,"domain_scores_codex":[0.9989815,0.0000437514,0.0001887847,0.0002264989,0.000303729,0.0002557217],"domain_scores_gemma":[0.9995182,0.0001002968,0.00006860016,0.0001277934,0.00009999786,0.00008510923],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006722882,0.00003642263,0.01251851,0.000008563324,0.000022156,0.000001726021,0.0001371429,0.0001888472,0.9762819,0.0005189776,0.001430602,0.008848456],"study_design_scores_gemma":[0.00007331914,0.00008905378,0.8759055,0.000009657398,0.00001472669,0.000004162096,0.00007336253,0.0001009347,0.008081803,0.001149706,0.114373,0.0001247464],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934013,0.0003100977,8.026696e-7,0.004156825,0.0003329683,0.0002575287,0.0003343619,0.0000486981,0.00115743],"genre_scores_gemma":[0.9981508,0.00004813165,0.0002703858,0.0006244485,0.0003032408,0.0000108114,0.00004502929,0.00000155184,0.000545557],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9682001,"threshold_uncertainty_score":0.1971065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01967609318109395,"score_gpt":0.2384106050097798,"score_spread":0.2187345118286859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}