{"id":"W4380987160","doi":"10.1016/j.chom.2023.05.028","title":"Virion glycosylation influences mycobacteriophage immune recognition","year":2023,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"Palmerston North City Council; National Institute of General Medical Sciences; Graduate School of Public Health, University of Pittsburgh; National Institutes of Health; Hillman Foundation; Biological and Environmental Research; University of Pittsburgh; Henry Lea Hillman, Jr. Foundation; Oregon Health and Science University; U.S. Department of Energy; Office of Science; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute","keywords":"Glycosylation; Biology; Glycan; Capsid; Immune system; Bacteriophage; Antibody; Virology; Microbiology; Virus; Glycoprotein; Gene; Molecular biology; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001262404,0.0001786792,0.0001124398,0.00008737292,0.0001080182,0.0003110248,0.00006455532,0.0002052598,0.0006222566],"category_scores_gemma":[0.0001705458,0.00007117744,0.0001628705,0.00007686207,0.0002002505,0.0001619489,0.0001658419,0.0002971208,0.0001208176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001304384,"about_ca_system_score_gemma":0.0001222298,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004508512,"about_ca_topic_score_gemma":0.0006420329,"domain_scores_codex":[0.9998864,0.00002434724,0.000006647196,0.00001813974,0.00002421862,0.00004019326],"domain_scores_gemma":[0.9998914,0.00003283484,0.00001803836,0.00001093984,0.00001688221,0.00002984724],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004455393,0.000007477852,0.000782255,0.000007886159,0.00000168346,0.0000203139,0.00001062977,0.00001415789,0.9986002,0.00003164886,0.000004854209,0.0004743976],"study_design_scores_gemma":[0.00001067091,0.0003671107,0.06012262,0.000005788314,0.00002558058,0.0001865819,0.0001029076,0.0005926779,0.937455,0.0001072268,0.00101741,0.00000643477],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989026,0.0002442912,0.0002208345,0.00001507461,0.000006055365,0.000002438971,0.00001840228,0.000005303555,0.0005850502],"genre_scores_gemma":[0.9992065,0.0001484654,0.0002424067,0.00002192735,0.000002701101,0.000001518745,0.00003318314,0.000003805248,0.0003394348],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006222566,"threshold_uncertainty_score":0.002081633,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141251514261258,"score_gpt":0.2258798803216512,"score_spread":0.2144673651790386,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}