{"id":"W4380987160","doi":"10.1016/j.chom.2023.05.028","title":"Virion glycosylation influences mycobacteriophage immune recognition","year":2023,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"Palmerston North City Council; National Institute of General Medical Sciences; Graduate School of Public Health, University of Pittsburgh; National Institutes of Health; Hillman Foundation; Biological and Environmental Research; University of Pittsburgh; Henry Lea Hillman, Jr. Foundation; Oregon Health and Science University; U.S. Department of Energy; Office of Science; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute","keywords":"Glycosylation; Biology; Glycan; Capsid; Immune system; Bacteriophage; Antibody; Virology; Microbiology; Virus; Glycoprotein; Gene; Molecular biology; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001543992,0.0001729991,0.0001393184,0.00007807629,0.0002511855,0.0001026034,0.0001864944,0.0001015491,0.006382145],"category_scores_gemma":[0.00001479828,0.0001752229,0.0001010831,0.0004887466,0.00008493762,0.0005572261,0.0002008296,0.000165516,0.02755072],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001278564,"about_ca_system_score_gemma":0.000008754549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006822452,"about_ca_topic_score_gemma":0.0001347339,"domain_scores_codex":[0.9988833,0.00004644896,0.0002914346,0.0003430311,0.0001044401,0.0003313247],"domain_scores_gemma":[0.9995085,0.00003540783,0.0001339994,0.0002328126,0.00001511338,0.00007415337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001778509,0.00004439795,0.000572237,0.00001055385,0.00000443018,0.000009058402,0.0003037782,0.00002830524,0.9870453,5.510416e-7,0.002898898,0.009064629],"study_design_scores_gemma":[0.0002949672,0.00006540987,0.3429767,0.00003576241,0.00002119791,0.00001838947,0.00009824159,0.0000902503,0.5614978,0.00004311213,0.09458737,0.0002708223],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923608,0.00005380826,0.00006214769,0.0001813199,0.0006180347,0.0002254325,0.00005011184,0.0001918506,0.006256539],"genre_scores_gemma":[0.9948117,0.0002277723,0.0003249203,0.0002361907,0.000081606,0.00002149044,0.0002844289,0.00002743897,0.003984507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4255476,"threshold_uncertainty_score":0.9945261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141251514261258,"score_gpt":0.2258798803216512,"score_spread":0.2144673651790386,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}