{"id":"W4380992985","doi":"10.1099/acmi.0.000539.v3","title":"A multiphasic approach to solve misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2023,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; University of Ottawa","funders":"Health Canada; Canadian Blood Services","keywords":"Microbiology; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004280133,0.0001890248,0.0003163712,0.0001030835,0.0001516195,0.000073782,0.0005581722,0.0001777995,0.0000134577],"category_scores_gemma":[0.000186121,0.000161652,0.0001031674,0.0003448902,0.000207803,0.00002101202,0.0003674738,0.00008016115,0.000007756773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002349836,"about_ca_system_score_gemma":0.00006242868,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002973611,"about_ca_topic_score_gemma":0.00002226561,"domain_scores_codex":[0.9983601,0.0001649821,0.0006073001,0.0004912429,0.00005794934,0.0003184398],"domain_scores_gemma":[0.9987172,0.00004375004,0.0004115952,0.000506139,0.0002673643,0.00005389415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001799522,0.00004313708,0.00570619,0.0001764965,0.00007693562,7.714162e-7,0.0003299435,0.000215583,0.9930695,0.00005267781,0.00005936497,0.0000894611],"study_design_scores_gemma":[0.0005672188,0.00004463103,0.02076393,0.00005644719,0.00003097261,0.00005683861,0.0007888358,0.0002748605,0.9770344,0.000003459785,0.0002136397,0.0001646874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969196,0.0000527538,0.001764662,0.00007080258,0.0004994671,0.0004949603,0.0001240695,0.00004140637,0.00003226487],"genre_scores_gemma":[0.9978113,0.00001026217,0.000890693,0.00002584745,0.0001864188,0.00002481689,0.0009641584,0.00002534715,0.00006112832],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01603501,"threshold_uncertainty_score":0.6591977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0336209227883743,"score_gpt":0.300398493837945,"score_spread":0.2667775710495707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}