{"id":"W4381611334","doi":"10.1016/j.jfp.2023.100122","title":"Stress Resistance and Virulence Gene Profiles Associated with Phylogeny and Phenotypes of Escherichia coli from Cattle","year":2023,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council","keywords":"Biology; Virulence; Escherichia coli; Gene; Microbiology; Genetics; Antibiotic resistance; Phenotype; Phylogenetics; Locus (genetics); Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002288792,0.00007909359,0.0001460162,0.00004302184,0.000072963,0.00001413155,0.00006074347,0.00006529161,0.000001101626],"category_scores_gemma":[0.000301076,0.0000621885,0.0000218453,0.000164432,0.00009802893,0.000007999179,0.00005289271,0.0001159281,1.4394e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001163996,"about_ca_system_score_gemma":0.00005970788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002325972,"about_ca_topic_score_gemma":0.0002662321,"domain_scores_codex":[0.9993544,0.00008428848,0.0001593519,0.0001245958,0.0001675631,0.0001097903],"domain_scores_gemma":[0.9993824,0.00002448533,0.0002445662,0.00007625209,0.0002319172,0.00004038784],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003781742,0.00003157864,0.003628656,0.00004240202,0.0002277819,0.000001786503,0.0001249364,0.00002703742,0.994838,0.000003709769,0.00006344375,0.0006324816],"study_design_scores_gemma":[0.0005873411,0.001398335,0.2017471,0.0001171731,0.00003118474,0.000002344026,0.0002181919,0.00003661933,0.7954639,0.0001765006,0.0001367534,0.00008454964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968556,0.002497377,0.00026653,0.00009289392,0.00003168497,0.0001784261,0.00004620709,0.000004839845,0.00002639686],"genre_scores_gemma":[0.9984258,0.0007408946,0.0006449278,0.000007420645,0.00008068533,0.00001727552,0.000005013116,0.000009657527,0.00006830361],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1993741,"threshold_uncertainty_score":0.2535973,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01600625068214515,"score_gpt":0.2420739741383964,"score_spread":0.2260677234562512,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}