{"id":"W4381715933","doi":"10.1111/jbg.12813","title":"Genome‐wide association studies for epistatic genetic effects on fertility and reproduction traits in Holstein cattle","year":2023,"lang":"en","type":"article","venue":"Journal of Animal Breeding and Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Bayer (Canada)","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Biology; Epistasis; Single-nucleotide polymorphism; Genetics; Genome-wide association study; Genetic architecture; Quantitative trait locus; SNP; Population; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005261496,0.0001235179,0.0002170455,0.0000926806,0.00007401393,0.00002195871,0.00006526185,0.0001005683,3.623582e-7],"category_scores_gemma":[0.001164907,0.0001139427,0.00004849193,0.0001001901,0.00004359338,0.000004115154,0.00003726404,0.0001013688,6.033968e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003040755,"about_ca_system_score_gemma":0.00003257659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001161157,"about_ca_topic_score_gemma":0.000006087083,"domain_scores_codex":[0.9990376,0.00005893518,0.0003232766,0.0002473188,0.0001371399,0.0001957639],"domain_scores_gemma":[0.9992506,0.0002576807,0.0001999011,0.00008106438,0.00014495,0.00006583022],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001913197,0.0001726027,0.207077,0.0008855522,0.000477745,0.000007196997,0.002831358,0.00290674,0.7403445,0.00008693594,0.003343979,0.03995324],"study_design_scores_gemma":[0.0008070369,0.003895656,0.9784063,0.00005312764,0.00005395517,0.00001076405,0.0002848502,0.00003514706,0.01415648,0.001530139,0.0006496172,0.0001169574],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920737,0.006622846,0.0002304105,0.0006543358,0.0002012826,0.0001915689,0.000006902217,0.000004634822,0.00001431733],"genre_scores_gemma":[0.9932733,0.001464583,0.004703444,0.00009189684,0.0003124434,0.000008076152,0.000003696134,0.00001481445,0.0001277485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7713293,"threshold_uncertainty_score":0.4646448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02714493968461959,"score_gpt":0.2872650161135354,"score_spread":0.2601200764289159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}