{"id":"W4382010927","doi":"10.1128/mra.00186-23","title":"Profiling of the Klebsiella pneumoniae Phosphoproteome under Iron-Limited and Iron-Replete Conditions","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Klebsiella pneumoniae; Biology; Bacterial protein; Microbiology; Computational biology; Chemistry; Bacteria; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001717255,0.0001847548,0.0001878915,0.00006689804,0.0001772193,0.00001026446,0.0003102763,0.0003574349,0.0000149579],"category_scores_gemma":[0.00003176538,0.0001436057,0.00007518294,0.0002416767,0.0005012431,0.000001911718,0.0005088451,0.0001395347,0.00001766632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000117924,"about_ca_system_score_gemma":0.00004099302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008181413,"about_ca_topic_score_gemma":0.00001218712,"domain_scores_codex":[0.998812,0.00008044475,0.0002723719,0.0004244873,0.00005172364,0.0003589312],"domain_scores_gemma":[0.9992734,0.00001241056,0.0001521829,0.00046655,0.00005717971,0.00003830781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003531046,0.00003039878,0.008295395,0.00001959547,0.00005260884,9.99352e-7,0.00002372104,0.00006075862,0.9898344,0.00004588317,0.001494306,0.0001066573],"study_design_scores_gemma":[0.0008957956,0.0003988645,0.004592054,0.00003088767,0.00004284123,0.00005636076,0.0003123073,0.00002475466,0.8092163,0.00007011222,0.1840703,0.0002894308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970227,0.0003064342,0.00001526581,0.000991112,0.0001792259,0.0003822157,0.0009106564,0.00002706568,0.0001653259],"genre_scores_gemma":[0.99539,0.0001975391,0.00009921977,0.0005570257,0.00006922868,0.0000366197,0.002295949,0.00002379659,0.00133065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.182576,"threshold_uncertainty_score":0.5856069,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01018627028573662,"score_gpt":0.2293918975058814,"score_spread":0.2192056272201447,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}