{"id":"W4382047071","doi":"10.1007/978-1-0716-3338-0_5","title":"Analysis of Efferocytic Receptor Dynamics and Synapse Formation in a Frustrated Efferocytosis Model","year":2023,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Robarts Clinical Trials; Western University","funders":"Canadian Institutes of Health Research","keywords":"Efferocytosis; Synapse; Receptor; Immunological synapse; Cell biology; Biology; Neuroscience; Immunology; T cell; T-cell receptor; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001307723,0.0003294415,0.000543364,0.0002848205,0.000417346,0.0005119235,0.0009701281,0.0006944018,0.001530827],"category_scores_gemma":[0.0003888382,0.0002008687,0.0003845835,0.0001997786,0.0004140176,0.0005068185,0.0002976538,0.0005729598,0.0002052275],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006603244,"about_ca_system_score_gemma":0.000434157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002654827,"about_ca_topic_score_gemma":0.001391202,"domain_scores_codex":[0.9999141,0.00000745031,0.00000353678,0.00001929623,0.00002657155,0.00002906714],"domain_scores_gemma":[0.999806,0.00005926456,0.00004950729,0.00002143511,0.000023339,0.00004048111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004122826,0.0001993581,0.00136004,0.0001810018,0.00008158032,0.0006401375,0.00008273174,0.1727496,0.7838691,0.0376549,0.0005078926,0.002261283],"study_design_scores_gemma":[0.00003687176,0.00005240743,0.001064845,0.000003811902,0.00001985849,0.00007042023,0.00002450849,0.9532866,0.04140821,0.00375921,0.0002504627,0.00002264984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9757338,0.0002704306,0.02056874,0.0001837176,0.00002630907,0.00001385543,0.000178398,0.0001051335,0.002919612],"genre_scores_gemma":[0.9923848,0.0001935377,0.005749954,0.00002897005,0.000007815176,0.00002315205,0.0001245579,0.00002960249,0.001457609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002654827,"threshold_uncertainty_score":0.005278766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02189174798044808,"score_gpt":0.3533165997728107,"score_spread":0.3314248517923626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}