{"id":"W4382136738","doi":"10.3390/v15071419","title":"Kunjin Virus, Zika Virus, and Yellow Fever Virus Infections Have Distinct Effects on the Coding Transcriptome and Proteome of Brain-Derived U87 Cells","year":2023,"lang":"en","type":"article","venue":"Viruses","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Université de Sherbrooke","keywords":"Zika virus; Transcriptome; Virology; Virus; Biology; Proteome; Gene; Gene expression; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007723649,0.0002376461,0.000183297,0.000230799,0.0002029208,0.0003232879,0.00007420399,0.0001355828,0.0005868395],"category_scores_gemma":[0.0001153294,0.0001022044,0.0002465166,0.0002092686,0.0001642362,0.000192496,0.0001961327,0.0002776643,0.0001773055],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001339748,"about_ca_system_score_gemma":0.0001518805,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008726764,"about_ca_topic_score_gemma":0.00125133,"domain_scores_codex":[0.9999043,0.0000100135,0.000008221274,0.00002551084,0.00002544738,0.00002661689],"domain_scores_gemma":[0.9999399,0.00001270654,0.00001736508,0.000006442561,0.000009623936,0.00001386743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000662101,0.000005755733,0.0007311924,0.00001916581,0.000007220285,0.00002818573,0.00003113295,0.00001226636,0.9984232,0.00003303833,0.00001529824,0.0006274035],"study_design_scores_gemma":[0.000007267677,0.0002986169,0.1603368,0.00001152195,0.00006953789,0.0007154091,0.0004057048,0.001098322,0.8344589,0.0001670347,0.00241598,0.00001504458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99467,0.001473914,0.001677149,0.00003548945,0.00002138634,0.00001262165,0.001112188,0.00002467556,0.0009726338],"genre_scores_gemma":[0.9907755,0.001580801,0.002882301,0.00007612072,0.00001060193,0.0000475712,0.002674675,0.00002346718,0.001928963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008726764,"threshold_uncertainty_score":0.001963139,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02096558857970452,"score_gpt":0.2703305199763584,"score_spread":0.2493649313966539,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}