{"id":"W4382136738","doi":"10.3390/v15071419","title":"Kunjin Virus, Zika Virus, and Yellow Fever Virus Infections Have Distinct Effects on the Coding Transcriptome and Proteome of Brain-Derived U87 Cells","year":2023,"lang":"en","type":"article","venue":"Viruses","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Université de Sherbrooke","keywords":"Zika virus; Transcriptome; Virology; Virus; Biology; Proteome; Gene; Gene expression; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002915263,0.0003049842,0.0004992792,0.0001979977,0.0002822423,0.0000669491,0.0001063773,0.0001128751,0.0001321072],"category_scores_gemma":[0.0003104415,0.0002137962,0.0001522344,0.0003273018,0.0002526802,0.0001162018,0.00006316389,0.0002481478,0.00005825005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003130353,"about_ca_system_score_gemma":0.00005982143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006913063,"about_ca_topic_score_gemma":0.0002313321,"domain_scores_codex":[0.9983825,0.0001640811,0.0003277579,0.0004294453,0.0003194915,0.0003767066],"domain_scores_gemma":[0.9983381,0.0008736267,0.0001208324,0.0003931308,0.00005752346,0.0002167684],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003816393,0.0002043534,0.005473208,0.0004225235,0.0001908219,0.00005165569,0.0005434077,0.000004540242,0.9873661,0.000255467,0.002951643,0.002154663],"study_design_scores_gemma":[0.003962785,0.001163086,0.2009713,0.0007319145,0.0005927122,0.00001603112,0.0002882458,0.0006713487,0.7695785,0.0003114553,0.02125608,0.0004565472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958042,0.0006575047,0.0001097008,0.001007493,0.000191934,0.001501989,0.0002345585,0.0001607148,0.0003319244],"genre_scores_gemma":[0.9955599,0.0004045573,0.00001472737,0.003144814,0.0001884199,0.0002366956,0.00001445703,0.00005410002,0.0003823204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2177876,"threshold_uncertainty_score":0.8718357,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02096558857970452,"score_gpt":0.2703305199763584,"score_spread":0.2493649313966539,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}