{"id":"W4382201857","doi":"10.17504/protocols.io.yxmvmk2x5g3p/v2","title":"Mitochondrial Antigen Presentation in RAW macrophages v2","year":2021,"lang":"en","type":"preprint","venue":"","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University","funders":"","keywords":"Antigen presentation; Antigen; MHC class I; Virology; Antigen processing; CD8; Major histocompatibility complex; Molecular biology; Chemistry; Biology; T cell; Immune system; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009560055,0.001805748,0.0007578359,0.000838684,0.0009473009,0.0008610446,0.001675056,0.0008677961,0.0218373],"category_scores_gemma":[0.0004033475,0.0007230217,0.0009215992,0.0008052978,0.0004195925,0.0005279059,0.0008834705,0.002612022,0.03165992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005902394,"about_ca_system_score_gemma":0.0005752326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008887554,"about_ca_topic_score_gemma":0.001330587,"domain_scores_codex":[0.9982758,0.000310869,0.0001712298,0.0003739749,0.0005273414,0.0003408261],"domain_scores_gemma":[0.9995335,0.00008542485,0.00002838484,0.0001929714,0.0001091791,0.0000505988],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000297693,0.0001017729,0.00006401657,0.0001949274,0.00001299661,0.00006111429,0.00009911063,0.00009276159,0.9903554,0.001058314,0.002691692,0.004970173],"study_design_scores_gemma":[0.00007406089,0.0002374104,0.0009819472,0.0000359522,0.00001586633,0.0001755252,0.0000261582,0.0005236088,0.9444669,0.0003038237,0.05313668,0.000021994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3264805,0.007923903,0.4170563,0.001719037,0.003722881,0.01091981,0.09647405,0.01249289,0.1232106],"genre_scores_gemma":[0.3066895,0.005947418,0.2384141,0.001062425,0.0005185157,0.01455671,0.2216173,0.004597113,0.2065968],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0218373,"threshold_uncertainty_score":0.073053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01588516664367687,"score_gpt":0.2823397037990568,"score_spread":0.2664545371553799,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}