{"id":"W4382561552","doi":"10.1101/2023.06.27.546733","title":"The Salivary Microbiome and Predicted Metabolite Production are Associated with Progression from Barrett’s Esophagus to Esophageal Adenocarcinoma","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Cancer Institute; Canadian Institute for Advanced Research; U.S. Department of Defense","keywords":"Esophageal adenocarcinoma; Barrett's esophagus; Microbiome; Metabolite; Esophagus; Medicine; Gastroenterology; Adenocarcinoma; Internal medicine; Biology; Bioinformatics; Cancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004981053,0.0003292591,0.0003924151,0.0005764908,0.0002145008,0.0007606626,0.0001376789,0.0003478419,0.001553839],"category_scores_gemma":[0.001217544,0.000167084,0.0008265832,0.0005792318,0.0001472934,0.0002286091,0.0004587677,0.0004260401,0.0002700934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002487041,"about_ca_system_score_gemma":0.0001870272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001976965,"about_ca_topic_score_gemma":0.002133227,"domain_scores_codex":[0.9998062,0.00007016893,0.00001983472,0.00005077557,0.00002989323,0.00002317377],"domain_scores_gemma":[0.9995315,0.0001551551,0.0001699704,0.00004020399,0.00005127238,0.00005200168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007188328,0.00006506796,0.9749007,0.0000665413,0.0001684919,0.00008979268,0.00005964746,0.002503637,0.0108381,0.00005021584,0.0002328081,0.01030628],"study_design_scores_gemma":[0.00002134411,0.0002875536,0.9684951,0.00004171368,0.0001958891,0.0004165765,0.0002922179,0.02499172,0.00382452,0.0003387847,0.001078427,0.00001603123],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966184,0.0008190093,0.001252984,0.0001092108,0.000008203068,0.000008662794,0.0008761839,0.00002611917,0.0002812663],"genre_scores_gemma":[0.9969958,0.0002683368,0.001567419,0.00003217198,0.000006267291,0.000009748894,0.0009572696,0.000006385785,0.0001566427],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001976965,"threshold_uncertainty_score":0.005198061,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01997940531967672,"score_gpt":0.2596364172598758,"score_spread":0.2396570119401991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}