{"id":"W4382726212","doi":"10.3389/fpls.2023.1161864","title":"Genome resources and whole genome resequencing of Phytophthora rubi isolates from red raspberry","year":2023,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Blowing a raspberry; Genome; Rubus; Genetics; Genetic diversity; Phytophthora; Whole genome sequencing; Reference genome; Population; Botany; Gene; Horticulture","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005156276,0.0006574782,0.0009148311,0.00218625,0.00154572,0.0007075193,0.0006467492,0.0004558368,0.001365829],"category_scores_gemma":[0.0007703842,0.0003794392,0.0007822049,0.004353817,0.0003423664,0.0002625535,0.0007449534,0.001075972,0.0009403013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001159418,"about_ca_system_score_gemma":0.003021365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.08761188,"about_ca_topic_score_gemma":0.1850245,"domain_scores_codex":[0.9994356,0.00002710209,0.00003684292,0.0002097132,0.000178675,0.0001120502],"domain_scores_gemma":[0.9994116,0.00008227977,0.0001058701,0.00007187898,0.0002277199,0.0001007271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005172211,0.0001525452,0.01242434,0.0007108602,0.00008482521,0.001011026,0.001629474,0.0009290856,0.9578357,0.0003241642,0.002929151,0.02145155],"study_design_scores_gemma":[0.0001717675,0.0005339523,0.8255458,0.0002457557,0.0004620499,0.001729788,0.001731717,0.005143696,0.08670364,0.0003588193,0.07724442,0.0001285449],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7972957,0.001578143,0.01517635,0.000201296,0.00005027205,0.0008485962,0.179307,0.0008086623,0.004733947],"genre_scores_gemma":[0.4091915,0.001980433,0.0690696,0.0003131774,0.0000432851,0.001252856,0.5110227,0.0006535867,0.006472826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08761188,"threshold_uncertainty_score":0.1742039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562391092613971,"score_gpt":0.1990736235705705,"score_spread":0.1834497126444307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}