{"id":"W4382726212","doi":"10.3389/fpls.2023.1161864","title":"Genome resources and whole genome resequencing of Phytophthora rubi isolates from red raspberry","year":2023,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Blowing a raspberry; Genome; Rubus; Genetics; Genetic diversity; Phytophthora; Whole genome sequencing; Reference genome; Population; Botany; Gene; Horticulture","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007028483,0.0001225485,0.0002443997,0.00009725375,0.0002559211,0.000065648,0.000509012,0.000069283,0.00001357175],"category_scores_gemma":[0.00007710001,0.00005469444,0.00003298716,0.00134606,0.00041294,0.0002001878,0.0001557385,0.0001130219,0.000006261445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003466908,"about_ca_system_score_gemma":0.00001840481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001840809,"about_ca_topic_score_gemma":0.0001529848,"domain_scores_codex":[0.9985214,0.00004671348,0.0002484673,0.0004672582,0.0002959665,0.0004201441],"domain_scores_gemma":[0.9995515,0.0001128963,0.0001112453,0.00008588754,0.00003043723,0.0001079709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003061818,0.000008805494,0.03058848,0.000006299895,0.000003135016,0.00003704805,0.0001466244,0.00003844053,0.9680526,0.000006039436,0.0001972679,0.0008846642],"study_design_scores_gemma":[0.00008479904,0.00005515771,0.9848421,0.00006440817,0.00000393387,0.000007778935,0.001083574,0.001018008,0.003372126,0.0007691467,0.008528142,0.0001708294],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965394,0.001166666,0.000007044205,0.0002740603,0.000218077,0.0001188289,0.001216115,0.00004281571,0.000417005],"genre_scores_gemma":[0.9981098,0.0005181027,0.0009040479,0.00002767276,0.00007453035,0.000005153354,0.0001171198,0.000001007032,0.0002425471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9646804,"threshold_uncertainty_score":0.2230375,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562391092613971,"score_gpt":0.1990736235705705,"score_spread":0.1834497126444307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}