{"id":"W4382789260","doi":"10.24072/pci.evolbiol.100644","title":"How the tubercle bacillus got its genome: modernising, modelling, and making sense of the stories we tell","year":2023,"lang":"en","type":"article","venue":"Peer Community in Evolutionary Biology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Tubercle; Bacillus (shape); Sense (electronics); Biology; Genome; Genetics; Gene; Bacteria; Engineering; Bacilli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003297518,0.0004679193,0.0003553145,0.001032938,0.001026923,0.00465195,0.001017932,0.00275032,0.01255342],"category_scores_gemma":[0.02115344,0.0003976545,0.0004684073,0.001392828,0.002326595,0.008469427,0.001716346,0.004195061,0.005418326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006657835,"about_ca_system_score_gemma":0.001278636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003926955,"about_ca_topic_score_gemma":0.004264147,"domain_scores_codex":[0.9992482,0.0003580742,0.00002692067,0.00008807826,0.0002329076,0.00004581628],"domain_scores_gemma":[0.9960722,0.002087316,0.0002062093,0.0005469537,0.00057899,0.0005082843],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001903815,0.00003735295,0.005048912,0.001125416,0.0001064883,0.0008278374,0.00854778,0.004332114,0.003262967,0.09309763,0.6435022,0.2399209],"study_design_scores_gemma":[0.00001236148,0.00002096162,0.00135819,0.0005369755,0.0000282846,0.0004125038,0.001868636,0.001531842,0.0007633835,0.1183946,0.875015,0.00005718885],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.01865943,0.07139438,0.08799262,0.7370922,0.02388795,0.00007434699,0.005600788,0.003877122,0.0514212],"genre_scores_gemma":[0.3590473,0.1341364,0.2502142,0.1020411,0.01182329,0.0002906034,0.009988129,0.01196937,0.1204898],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01255342,"threshold_uncertainty_score":0.04199541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06800387369015048,"score_gpt":0.3041397611111079,"score_spread":0.2361358874209574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}