{"id":"W4382798889","doi":"10.17504/protocols.io.rm7vzxm35gx1/v1","title":"How to Measure the Illumination Overhead (IO) of a Fluorescence Microscope v1","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Advanced Fluorescence Microscopy Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Microscope; Photobleaching; Oscilloscope; Software; Microscopy; Fluorescence microscope; Measure (data warehouse); Optics; Fluorescence; Computer science; Phototoxicity; Protocol (science); Computer hardware; Materials science; Physics; Chemistry; Detector","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003756889,0.0003557927,0.0003129209,0.00009868792,0.00008083883,0.00008290529,0.0009960345,0.0004846515,0.000006484738],"category_scores_gemma":[0.0005210052,0.000274204,0.0001841105,0.0001986455,0.0002431639,0.000004695745,0.001568074,0.0003589769,0.00001252559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006195788,"about_ca_system_score_gemma":0.0001856199,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001079618,"about_ca_topic_score_gemma":0.0001623829,"domain_scores_codex":[0.9981422,0.00008672386,0.0003206352,0.0007909925,0.0003159431,0.0003434531],"domain_scores_gemma":[0.9979562,0.00002216594,0.0002354709,0.001289192,0.0004170187,0.00007997177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005252288,0.00002947421,0.0001996985,0.00008991203,0.00003639001,0.00000139012,0.00008538244,0.00004411351,0.9813089,0.0001009322,0.01509055,0.002960729],"study_design_scores_gemma":[0.00009948715,0.0001490323,0.0006422177,0.0002223721,0.00002161154,0.000002858993,0.0001645757,0.00003318693,0.9897934,0.000342695,0.008217823,0.0003107298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.0898049,0.001672669,0.893074,0.008069741,0.001266208,0.004204583,0.0005264228,0.0003689821,0.001012554],"genre_scores_gemma":[0.6873757,0.001142957,0.2948061,0.000749857,0.0005363667,0.0006436267,0.0005988279,0.0002251436,0.01392144],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.5982679,"threshold_uncertainty_score":0.999971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02398068687137397,"score_gpt":0.2975434930361985,"score_spread":0.2735628061648246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}