{"id":"W4382982619","doi":"10.3390/microorganisms11071736","title":"Comparative Genomic Analysis of a Novel Vibrio sp. Isolated from an Ulcer Disease Event in Atlantic Salmon (Salmo salar)","year":2023,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Ocean Frontier Institute","keywords":"Salmo; Vibrio; Biology; Outbreak; Microbiology; Aquaculture; Vibrio Infections; Zoology; Virology; Bacteria; Fishery; Fish <Actinopterygii>; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001723103,0.000336014,0.0007662131,0.0006677478,0.0001062129,0.00002912742,0.0004308572,0.0001941796,0.001254912],"category_scores_gemma":[0.00001371461,0.0003157181,0.0002710644,0.001562756,0.000155603,0.0001167244,0.0002361776,0.00021526,0.0009000307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009571861,"about_ca_system_score_gemma":0.00006755742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001308776,"about_ca_topic_score_gemma":0.001150283,"domain_scores_codex":[0.9980909,0.0001700097,0.0005599297,0.000644672,0.00005296099,0.000481524],"domain_scores_gemma":[0.9990649,0.0000622942,0.0002180114,0.0005174241,0.00006309317,0.00007430303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003983377,0.0006077122,0.03342885,0.00001761422,0.002155891,0.00002922902,0.002576759,0.0004034416,0.9583986,0.00008862874,0.001849611,0.00004535688],"study_design_scores_gemma":[0.002788386,0.0001061154,0.9269968,0.00005674328,0.002692994,0.000001955844,0.001278448,0.0009003206,0.06134025,0.00004619308,0.00323572,0.0005560272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968704,0.0007700533,0.0005031425,0.0001730404,0.0002103905,0.0004524323,0.0008213184,0.0001454219,0.00005382049],"genre_scores_gemma":[0.9892621,0.00004582249,0.000065707,0.0001763908,0.00002076869,0.0000141141,0.009574249,0.00003459123,0.0008062287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8970583,"threshold_uncertainty_score":0.9999295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01582401053775596,"score_gpt":0.2626002457195233,"score_spread":0.2467762351817673,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}