{"id":"W4383065799","doi":"10.1101/2023.07.04.547689","title":"Adaptative Laboratory Evolution reveals biofilm regulating genes as key players in <i>B. subtilis</i> root colonization","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Colonization; Bacillus subtilis; Pseudomonas fluorescens; Rhizobacteria; Biofilm; Gene; Pseudomonas; Bacteria; Microbiology; Botany; Genetics; Rhizosphere","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002616626,0.0003257829,0.000226086,0.0002144544,0.0001455315,0.0003569635,0.0002441925,0.0003573869,0.001220185],"category_scores_gemma":[0.0003352287,0.0001182239,0.0002662648,0.000163557,0.0001931513,0.0001363054,0.0004695282,0.0008188004,0.0002840634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000196574,"about_ca_system_score_gemma":0.0001716034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008186642,"about_ca_topic_score_gemma":0.000897581,"domain_scores_codex":[0.9998276,0.00003311482,0.00001465301,0.00004522725,0.00004336622,0.00003598105],"domain_scores_gemma":[0.9998201,0.0000499657,0.00005056601,0.00002497722,0.00001981329,0.00003476578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005055194,0.00002516275,0.0005479003,0.000008380096,0.000003632749,0.00002726971,0.00001301544,0.00004385583,0.9982234,0.00002998384,0.00002132291,0.001005413],"study_design_scores_gemma":[0.00003293695,0.0006751897,0.06621848,0.00001437588,0.0000399178,0.0007803451,0.000214999,0.003944182,0.9251989,0.0001497878,0.002702055,0.00002883767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955343,0.0001585916,0.002894361,0.00009553709,0.00001560704,0.00002123928,0.0003674177,0.00007048859,0.0008423408],"genre_scores_gemma":[0.9907031,0.0001641612,0.005316543,0.00009447549,0.000009663768,0.00004668534,0.00127685,0.00007402762,0.002314572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001220185,"threshold_uncertainty_score":0.004081964,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02301400508996684,"score_gpt":0.2230237469975027,"score_spread":0.2000097419075359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}