{"id":"W4383069749","doi":"10.3389/fgene.2023.1197933","title":"Impact of Plasmodium falciparum infection on DNA methylation of circulating immune cells","year":2023,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"DNA methylation; Biology; Epigenetics; Immune system; Plasmodium falciparum; Methylation; Malaria; Differentially methylated regions; Immunology; CpG site; Genetics; Gene; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003419478,0.0001417883,0.0002260053,0.0002706813,0.0000297217,0.000006416422,0.000102731,0.0001950463,0.000004046679],"category_scores_gemma":[0.00008020459,0.0001475636,0.0001597521,0.0004029763,0.00005330799,0.000003083965,0.00005614516,0.00007783316,0.000002310849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003668316,"about_ca_system_score_gemma":0.00006170464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005174745,"about_ca_topic_score_gemma":0.000008343045,"domain_scores_codex":[0.9988517,0.00009228983,0.0004359389,0.0002361442,0.0001736798,0.0002102538],"domain_scores_gemma":[0.9992915,0.00001993802,0.000246433,0.000309957,0.00009341766,0.00003869868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004675306,0.00004558418,0.1337082,0.00002503029,0.0000475334,4.050255e-7,0.00008075856,0.1056216,0.7540458,0.00000413887,0.0001421008,0.006232091],"study_design_scores_gemma":[0.0003379809,0.0004623879,0.2784151,0.00001760131,0.00001337831,1.46902e-7,0.00002222292,0.006503504,0.7137174,0.0002611301,0.0001420734,0.0001070569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886696,0.0007250506,0.009511573,0.000006462286,0.0005425618,0.0001980302,0.00002729279,0.00000931305,0.0003101023],"genre_scores_gemma":[0.9964816,0.001144516,0.002074409,0.000002612939,0.00006347237,0.000007779731,0.0001470646,0.00002567096,0.00005287551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1447069,"threshold_uncertainty_score":0.601747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01553355641622956,"score_gpt":0.2858091033234135,"score_spread":0.2702755469071839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}