{"id":"W4383218711","doi":"10.1101/2023.07.04.547740","title":"Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Neuroscience; Cell type; Sensory system; Dorsal root ganglion; Biology; Transcriptome; Trigeminal ganglion; Ganglion; Dorsum; Cell; Anatomy; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001449619,0.0004939714,0.0007082519,0.002235449,0.0008721593,0.001298241,0.0008226861,0.0005788967,0.00341546],"category_scores_gemma":[0.001376251,0.0003816092,0.0008211187,0.002439479,0.0006782037,0.0007947944,0.002204874,0.000768506,0.00175556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006541178,"about_ca_system_score_gemma":0.001110737,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002144659,"about_ca_topic_score_gemma":0.007083987,"domain_scores_codex":[0.9987435,0.0001359309,0.0001107119,0.0005320627,0.0003617565,0.0001161525],"domain_scores_gemma":[0.9988413,0.0001845607,0.000159423,0.0004026274,0.0003233053,0.00008881759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004407978,0.00003987747,0.01739347,0.001020358,0.0003687189,0.0005306519,0.00107353,0.005519947,0.8720614,0.00899447,0.009706281,0.08285049],"study_design_scores_gemma":[0.00006079855,0.0002825464,0.191337,0.0002845081,0.0006301821,0.002568898,0.001109395,0.01493613,0.4161361,0.01025314,0.362225,0.0001762153],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3333581,0.005061275,0.5341594,0.0003366744,0.0006959602,0.0003283883,0.0924293,0.008781186,0.0248496],"genre_scores_gemma":[0.3970163,0.00338231,0.4111397,0.0005669267,0.000104113,0.001530638,0.1673187,0.005924159,0.01301706],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00341546,"threshold_uncertainty_score":0.01142585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02117610183769002,"score_gpt":0.2299773529915919,"score_spread":0.2088012511539019,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}