{"id":"W4383268655","doi":"10.21769/bioprotoc.4713","title":"A Simple and Reproducible Stereomicroscopic Method to Assess Fungal Biofilms: Application to Antifungal Susceptibility Testing","year":2023,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; University of Regina","keywords":"Biofilm; Candida albicans; Microbiology; Antifungal; Biology; Opportunistic pathogen; Corpus albicans; Pathogen; Antibiotics; Bacteria; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002676013,0.0003180009,0.0005483281,0.0002518156,0.0002586635,0.0001054544,0.0002110887,0.0001707759,0.0001002111],"category_scores_gemma":[0.001419852,0.0002816791,0.00009282463,0.001745905,0.0000822101,0.0001275434,0.0003041433,0.0002499945,0.0003675928],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001596491,"about_ca_system_score_gemma":0.0002425815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000275137,"about_ca_topic_score_gemma":0.0001370864,"domain_scores_codex":[0.9966525,0.0001839492,0.0006990596,0.001406321,0.0004180568,0.0006401159],"domain_scores_gemma":[0.997308,0.0002543645,0.0001422353,0.001465874,0.0003502162,0.0004793583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000547368,0.0001127308,0.4650626,0.0005845727,0.00001335237,0.00001195876,0.00009388583,0.00000537942,0.5134363,0.00002128616,0.002338853,0.01777175],"study_design_scores_gemma":[0.001386321,0.0008719403,0.8167758,0.0001536001,0.00003070529,0.0000160991,0.0003380398,0.0004530574,0.1565915,0.0001227003,0.02292771,0.0003325277],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.5345861,0.000001571923,0.009267773,0.0004265076,0.00003950695,0.4544309,0.00004981521,0.0004363072,0.0007616067],"genre_scores_gemma":[0.313439,1.827932e-7,0.04645146,0.0006080212,0.0002818055,0.6381617,0.00002820233,0.00005691641,0.0009727257],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.3568448,"threshold_uncertainty_score":0.9999635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1022283028985827,"score_gpt":0.4336138552024485,"score_spread":0.3313855523038658,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}