{"id":"W4383312278","doi":"10.1016/j.mimet.2023.106780","title":"Biosensor for PCR amplicons by combining split trehalase and DNA-binding proteins: A proof of concept study","year":2023,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Amplicon; Biology; Exonuclease III; Polymerase chain reaction; Biosensor; Molecular biology; Computational biology; Escherichia coli; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00125128,0.000144958,0.0004217209,0.00006547294,0.0001284612,0.00003005708,0.0001843727,0.00009627629,0.0002070823],"category_scores_gemma":[0.0003592069,0.00009969042,0.0001476793,0.0002184221,0.0002344477,0.000111193,0.0001645225,0.0002130528,0.000004941143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005171609,"about_ca_system_score_gemma":0.000008955586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001551831,"about_ca_topic_score_gemma":0.000002567416,"domain_scores_codex":[0.998559,0.0003581451,0.0005703634,0.0002167149,0.00005505435,0.0002407142],"domain_scores_gemma":[0.9987409,0.0005566732,0.0004715352,0.0001063989,0.00003139186,0.00009310233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006334018,0.0003135998,0.0005172316,0.00000801257,0.00004862947,0.000005402797,0.0004045205,0.000007854666,0.9798804,0.000005353968,0.001534504,0.01721117],"study_design_scores_gemma":[0.001740634,0.003372086,0.009671854,0.00008127962,0.00008042481,0.0001848775,0.001603734,0.00003214949,0.962096,0.0001475859,0.02076854,0.0002207882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955105,0.00006706914,0.003172211,0.0002515275,0.0001663214,0.000685497,0.00008851127,0.00001366012,0.00004472294],"genre_scores_gemma":[0.9274437,0.00001987117,0.07199672,0.00006615763,0.00003789389,0.00002303755,0.000006620598,0.00001313999,0.0003928434],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06882451,"threshold_uncertainty_score":0.4065257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0537043097366221,"score_gpt":0.3657570501250533,"score_spread":0.3120527403884312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}