{"id":"W4383341585","doi":"10.3389/fimmu.2023.1191536","title":"Network proteomic analysis identifies inter-alpha-trypsin inhibitor heavy chain 4 during early human Achilles tendon healing as a prognostic biomarker of good long-term outcomes","year":2023,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Tendon Structure and Treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Bone and Joint Health Institute; University of Calgary","funders":"Reumatikerförbundet; Vetenskapsrådet; Karolinska Institutet","keywords":"Connective tissue; Biomarker; Medicine; Wound healing; Achilles tendon; Inflammation; Bioinformatics; Tendon; Pathology; Internal medicine; Immunology; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002328404,0.0003419538,0.001193739,0.001373518,0.0001510118,0.00002790452,0.0001990465,0.0002348419,0.00003088648],"category_scores_gemma":[0.00009692939,0.0002871017,0.0003578188,0.001388817,0.0002717868,0.00009132925,0.0001840562,0.0003299895,0.00001430352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000187791,"about_ca_system_score_gemma":0.00005667352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003542162,"about_ca_topic_score_gemma":0.0001629148,"domain_scores_codex":[0.9976178,0.0001895593,0.0007948617,0.0005271684,0.0002153506,0.0006552567],"domain_scores_gemma":[0.9989677,0.00006681694,0.0002968691,0.0005363343,0.0000609353,0.00007133991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006196763,0.0001758966,0.9776739,0.000148552,0.004532262,0.0003828538,0.0007687011,0.00001786897,0.01404769,0.00004056566,0.0001538113,0.001438163],"study_design_scores_gemma":[0.002964753,0.0004483931,0.9825645,0.0003099637,0.0008888512,0.00004769327,0.000338869,0.00002319843,0.01184315,0.0003593611,0.000007689709,0.00020358],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947895,0.001977625,0.0003121081,0.0005290281,0.001062531,0.001101025,0.00002169184,0.0001641598,0.00004232138],"genre_scores_gemma":[0.9978015,0.0001011574,0.0008367924,0.00003116712,0.0000869518,0.0001914694,0.000199339,0.0000458001,0.0007058273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004890536,"threshold_uncertainty_score":0.9999581,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496442261571029,"score_gpt":0.2833390869732785,"score_spread":0.2683746643575682,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}