{"id":"W4383738797","doi":"10.3354/ame02001","title":"Comparison of swab DNA extraction methods for examining sea star dermal microbiomes","year":2022,"lang":"en","type":"article","venue":"Aquatic Microbial Ecology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Tula Foundation","funders":"","keywords":"Biology; Microbiome; Proteobacteria; Bacteroidetes; DNA extraction; Amplicon; Metagenomics; 16S ribosomal RNA; Marine invertebrates; Amplicon sequencing; Zoology; Genetics; Polymerase chain reaction; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007875737,0.0001860964,0.0004343772,0.0001249784,0.0003135901,0.000009684609,0.0002605044,0.0001794303,0.0003076807],"category_scores_gemma":[0.0001138518,0.0002153841,0.0001287603,0.0001267078,0.0001097185,0.000004543015,0.0002203976,0.0001761481,0.000006964376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008362727,"about_ca_system_score_gemma":0.0003110113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000726865,"about_ca_topic_score_gemma":0.0002504289,"domain_scores_codex":[0.9980391,0.0004705017,0.000573827,0.0004298656,0.00004955019,0.0004371534],"domain_scores_gemma":[0.999047,0.0001711316,0.0003670975,0.0002870575,0.00006347153,0.00006419283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002068285,0.0002725776,0.0029852,0.00008318615,0.00008567689,7.847513e-7,0.0003073956,0.0000903626,0.9817149,0.00003705469,0.01051446,0.003701583],"study_design_scores_gemma":[0.001672435,0.002049635,0.004692325,0.000006351174,0.00009556933,0.00009758172,0.0007859976,0.0005697527,0.853268,0.00006014913,0.1363917,0.0003104974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9835075,0.0004642171,0.01409967,0.0002618049,0.0008139836,0.0006382552,0.0001196009,0.00001403446,0.00008098688],"genre_scores_gemma":[0.946631,0.00002008163,0.05134738,0.0005865995,0.0001255828,0.00008703396,0.0007595451,0.00003596155,0.0004068862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1284469,"threshold_uncertainty_score":0.8783107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04353524299378526,"score_gpt":0.3993898363132811,"score_spread":0.3558545933194959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}