{"id":"W4383738797","doi":"10.3354/ame02001","title":"Comparison of swab DNA extraction methods for examining sea star dermal microbiomes","year":2022,"lang":"en","type":"article","venue":"Aquatic Microbial Ecology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Tula Foundation","funders":"","keywords":"Biology; Microbiome; Proteobacteria; Bacteroidetes; DNA extraction; Amplicon; Metagenomics; 16S ribosomal RNA; Marine invertebrates; Amplicon sequencing; Zoology; Genetics; Polymerase chain reaction; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005713468,0.001227973,0.0006495397,0.003133806,0.0005787729,0.001414774,0.0006998819,0.0008882352,0.0009212967],"category_scores_gemma":[0.009989874,0.0006471281,0.0008563453,0.001463015,0.0006843201,0.0008668107,0.001371179,0.0005050862,0.0006509015],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002816549,"about_ca_system_score_gemma":0.0005936988,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008968748,"about_ca_topic_score_gemma":0.004124758,"domain_scores_codex":[0.9927659,0.002309456,0.00146303,0.001170945,0.001962485,0.0003282565],"domain_scores_gemma":[0.9948971,0.002288671,0.0009236411,0.0003914547,0.001296515,0.0002025428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001060959,0.0002793936,0.06019264,0.001426,0.0003942359,0.0001576166,0.000885178,0.0005584471,0.8837258,0.0001696574,0.0001957849,0.05095425],"study_design_scores_gemma":[0.000104757,0.008724974,0.3111035,0.0005354392,0.001092278,0.001534847,0.002531543,0.004158272,0.6590009,0.0005856123,0.0104317,0.0001962236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9225039,0.00488203,0.06649472,0.0002504017,0.0002547887,0.001042506,0.001868626,0.0001953876,0.002507559],"genre_scores_gemma":[0.6790671,0.007168369,0.3023982,0.0005014564,0.0001097114,0.002135028,0.006223713,0.0001701128,0.002226393],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005713468,"threshold_uncertainty_score":0.03021604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04353524299378526,"score_gpt":0.3993898363132811,"score_spread":0.3558545933194959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}