{"id":"W4384069971","doi":"10.1101/2023.07.10.548379","title":"<i>Mmp17-</i> deficient mice exhibit heightened goblet cell effector expression in the colon and increased resistance to chronic <i>Trichuris muris</i> infection","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Princess Margaret Cancer Centre; University Health Network","funders":"Norges Forskningsråd; University of Manchester; Medical Research Council; Kreftforeningen","keywords":"Biology; Goblet cell; Cell biology; Immunology; Immune system; Citrobacter rodentium; Intestinal epithelium; Effector; Homeostasis; Trichuris; Inflammation; Extracellular matrix; Epithelium; Helminths; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009920918,0.0005406096,0.000575041,0.0004442788,0.0004019545,0.0001664448,0.0005006341,0.0007185285,0.00004257025],"category_scores_gemma":[0.0002219553,0.0004699485,0.0001447996,0.000749302,0.0001111898,0.0001123226,0.0004804797,0.001210129,0.0005369188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004391048,"about_ca_system_score_gemma":0.0002703575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007113054,"about_ca_topic_score_gemma":0.0002835883,"domain_scores_codex":[0.9968112,0.0007043488,0.0006159765,0.001068949,0.0001370069,0.0006625401],"domain_scores_gemma":[0.997855,0.0005014797,0.0003950285,0.000966672,0.0001919864,0.00008984874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001920711,0.0002445041,0.01008292,0.0003128648,0.00004519095,0.00002558962,0.0000554714,0.00005281516,0.9803843,0.00006141375,0.008542085,7.958648e-7],"study_design_scores_gemma":[0.001126127,0.000174648,0.157535,0.0008282288,0.0001213923,1.696819e-7,0.000007163061,0.00001021897,0.781244,0.00000276014,0.05835528,0.0005949868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989565,0.005784588,0.0003807375,0.0003823648,0.001585226,0.001529714,0.0004641711,0.0002709417,0.00003725656],"genre_scores_gemma":[0.9972885,0.0008892939,0.0002756883,0.0004130313,0.0001598832,0.0008042174,0.000007144176,0.00008376026,0.00007848284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1991402,"threshold_uncertainty_score":0.9997752,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01068281750987282,"score_gpt":0.2313385595393411,"score_spread":0.2206557420294683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}