{"id":"W4384261453","doi":"10.1093/sysbio/syad042","title":"Phylogenomics reveals patterns of ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives","year":2023,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Natural Science Foundation of China; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenomics; Evolutionary biology; Phylogenetics; Clade; Subgenus; Salicaceae; Supermatrix; Botany; Woody plant; Taxonomy (biology); Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003617432,0.00009221635,0.0002574522,0.0000484373,0.00005786524,0.00001582757,0.00007803586,0.00006512349,0.00001289116],"category_scores_gemma":[0.00008505702,0.00004199703,0.00002205354,0.0001650993,0.00004846719,0.00002321265,0.0001321784,0.0000335517,0.000004923113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001526407,"about_ca_system_score_gemma":0.00000182421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006570262,"about_ca_topic_score_gemma":0.00009086516,"domain_scores_codex":[0.9990425,0.0002095016,0.000272055,0.0002687543,0.00006093052,0.0001463252],"domain_scores_gemma":[0.9996083,0.00008077417,0.0001555427,0.00006363489,0.0000456264,0.00004610501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002217551,0.00003773493,0.3097042,0.001219423,0.00003875505,0.00000111549,0.0006601285,0.00001477438,0.6831019,0.003921068,0.00004822542,0.001230548],"study_design_scores_gemma":[0.0002152903,0.0001418121,0.9951028,0.0002570804,0.00002099294,0.000002256164,0.0007442095,0.0001690865,0.002734086,0.0004044737,0.0001042881,0.0001036271],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979882,0.0003221622,0.0001493386,0.0006186932,0.0001434009,0.0006881141,0.00006400794,0.00002089096,0.000005236271],"genre_scores_gemma":[0.999459,0.000240145,0.0000228152,0.00008148812,0.00002629177,0.00003893942,0.00008249708,7.633151e-7,0.00004810419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6853986,"threshold_uncertainty_score":0.1712589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02794169088853083,"score_gpt":0.2325432802409156,"score_spread":0.2046015893523848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}