{"id":"W4384468955","doi":"10.1101/2023.07.16.549207","title":"Visualization of syntrophic benzene-fermenting <i>Desulfobacterota</i> ORM2 in a methanogenic enrichment culture using fluorescence <i>in situ</i> hybridization","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Innotech Alberta; Alberta Innovates; University of Waterloo; Genome Canada; Ontario Genomics; Mitacs; Government of Ontario; University of Alberta","keywords":"Anoxic waters; Benzene; Chemistry; Laboratory flask; Food science; Biology; Environmental chemistry; Organic chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001541259,0.0003876854,0.0002252206,0.00030796,0.0002167031,0.0002652581,0.0002231088,0.0004174134,0.0008028586],"category_scores_gemma":[0.0001207203,0.0002169251,0.0002915813,0.0002873164,0.0002002869,0.0001984094,0.0004232712,0.0003884968,0.0004041968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001997869,"about_ca_system_score_gemma":0.0001741092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001114656,"about_ca_topic_score_gemma":0.001563667,"domain_scores_codex":[0.9998827,0.00001489857,0.000008319558,0.00004136766,0.00002512028,0.00002749549],"domain_scores_gemma":[0.9998858,0.00002651511,0.0000330473,0.00001065087,0.00001903522,0.0000249103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009799604,0.000001623433,0.0001051263,0.00001184243,7.076497e-7,0.00003199849,0.00001231026,0.0000132735,0.9995302,0.00001289526,0.000005186856,0.0002650642],"study_design_scores_gemma":[0.00000587216,0.0001425515,0.009596792,0.00001245992,0.00001274081,0.0003906764,0.0001319124,0.001565429,0.9857226,0.00006008317,0.002348633,0.00001034409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9635926,0.0008045187,0.03117464,0.0002425028,0.00004364269,0.00007105309,0.0009295797,0.0003683172,0.002773002],"genre_scores_gemma":[0.9380048,0.0007586203,0.05395622,0.0001954589,0.00002144387,0.0001695726,0.001551557,0.0001464737,0.005195783],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001114656,"threshold_uncertainty_score":0.002685785,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01707070968127378,"score_gpt":0.2318688517416746,"score_spread":0.2147981420604008,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}