{"id":"W4384470868","doi":"10.1101/2023.07.14.549000","title":"A high-quality reference genome for the common creek chub, <i>Semotilus atromaculatus</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Alliance de recherche numérique du Canada; University of Delaware","keywords":"Synteny; Minnow; Biology; Contig; Genome; Sequence assembly; Reference genome; Computational biology; Evolutionary biology; Zebrafish; Genetics; Fish <Actinopterygii>; Fishery; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005261763,0.0006388793,0.0005015919,0.001392245,0.001045259,0.0008739767,0.0006848429,0.0007802552,0.004225175],"category_scores_gemma":[0.001077716,0.000319473,0.0005657786,0.001916226,0.0002663003,0.0003969718,0.0007571309,0.0007250012,0.002288128],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007832906,"about_ca_system_score_gemma":0.001132331,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01090095,"about_ca_topic_score_gemma":0.01259751,"domain_scores_codex":[0.9994125,0.00004357856,0.00002853298,0.0002418286,0.0002163787,0.00005724099],"domain_scores_gemma":[0.9995193,0.00006708073,0.00008560321,0.00007428355,0.0002067058,0.00004706289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007630314,0.0001001096,0.009818259,0.0006851958,0.0001102554,0.0006477279,0.0003948537,0.003954672,0.9234386,0.0015242,0.01368576,0.04487727],"study_design_scores_gemma":[0.0001423702,0.0004777888,0.1961577,0.0004247885,0.0003460033,0.002818695,0.0006730478,0.02033333,0.4564451,0.001892283,0.3200988,0.0001900667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6828099,0.00272141,0.1104721,0.0007890491,0.0004004881,0.000254752,0.1833425,0.005519394,0.01369047],"genre_scores_gemma":[0.278693,0.001003724,0.1549642,0.0002065846,0.00006338456,0.0002304134,0.5521715,0.002796956,0.009870235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01090095,"threshold_uncertainty_score":0.02167499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03535524601133324,"score_gpt":0.260345595466475,"score_spread":0.2249903494551417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}