{"id":"W4384662140","doi":"10.1093/gbe/evad133","title":"Diversity and Evolutionary History of Ti Plasmids of “tumorigenes” Clade of <i>Rhizobium</i> spp. and Their Differentiation from Other Ti and Ri Plasmids","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; German Network for Bioinformatics Infrastructure; Centre National de la Recherche Scientifique; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Plasmid; Biology; Genetics; Rhizobium; Ti plasmid; Gene; Agrobacterium tumefaciens; Transformation (genetics)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001241281,0.0001124484,0.0002320847,0.00003330577,0.0001977618,0.000001532986,0.0000686972,0.0001773614,0.00003867482],"category_scores_gemma":[0.00001904122,0.00005705341,0.00003418287,0.0001069548,0.0004267317,0.00006710794,0.0003285419,0.00005963847,0.000001297517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004651699,"about_ca_system_score_gemma":0.0000101007,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001170082,"about_ca_topic_score_gemma":0.0001432443,"domain_scores_codex":[0.9992754,0.00009426445,0.0001902267,0.0002462621,0.00005762743,0.0001362492],"domain_scores_gemma":[0.9995578,0.0001543803,0.0001536214,0.00004466052,0.00004391266,0.00004563561],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006148379,0.00002013391,0.5017866,0.00001771873,0.0000304725,1.043358e-7,0.0004320802,1.619208e-7,0.497018,0.0001561515,0.00007552237,0.0004016057],"study_design_scores_gemma":[0.0002206204,0.000219317,0.9927542,0.00001365952,0.00002984438,0.000002468051,0.0002015521,0.00008259076,0.003170293,0.002809336,0.0004019243,0.00009424653],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952393,0.004027817,0.00000504464,0.00009746536,0.0001182371,0.00009796516,0.0003543242,0.00002109636,0.0000387837],"genre_scores_gemma":[0.9993609,0.0003589575,0.00002933128,0.0000184335,0.00005245458,0.000002604282,0.0001013149,0.000001103534,0.00007491023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4938477,"threshold_uncertainty_score":0.232657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01715555057869598,"score_gpt":0.1835675083680859,"score_spread":0.1664119577893899,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}