{"id":"W4384662140","doi":"10.1093/gbe/evad133","title":"Diversity and Evolutionary History of Ti Plasmids of “tumorigenes” Clade of <i>Rhizobium</i> spp. and Their Differentiation from Other Ti and Ri Plasmids","year":2023,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; German Network for Bioinformatics Infrastructure; Centre National de la Recherche Scientifique; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Plasmid; Biology; Genetics; Rhizobium; Ti plasmid; Gene; Agrobacterium tumefaciens; Transformation (genetics)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002089142,0.0002645411,0.000241022,0.001423912,0.0002996497,0.0005168528,0.0002564393,0.0003004376,0.0007384814],"category_scores_gemma":[0.0006254349,0.000183762,0.0003420216,0.001182737,0.000206753,0.0003031884,0.0004465199,0.0004980255,0.0003981328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002943638,"about_ca_system_score_gemma":0.0003657301,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0018365,"about_ca_topic_score_gemma":0.001631144,"domain_scores_codex":[0.9997054,0.00003397079,0.00002703912,0.000108945,0.00005608923,0.00006855132],"domain_scores_gemma":[0.9994733,0.00008337557,0.0002111222,0.00004954484,0.0001051203,0.00007765279],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006168776,0.0001418935,0.1490009,0.0002727931,0.000100823,0.0007062884,0.001476805,0.00041969,0.8044432,0.000704903,0.0002643333,0.0418515],"study_design_scores_gemma":[0.00004200895,0.0007221787,0.9271991,0.0000775139,0.0001812352,0.005386651,0.001652556,0.002177954,0.04238571,0.0003746392,0.01972272,0.00007780667],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959424,0.0006303111,0.001361159,0.00005296961,0.000007375745,0.00002979657,0.0006732905,0.00002692214,0.001275684],"genre_scores_gemma":[0.9922475,0.0005156452,0.00289976,0.00005168469,0.00001121051,0.00003436976,0.003172281,0.00002575718,0.001041757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0018365,"threshold_uncertainty_score":0.003651559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01715555057869598,"score_gpt":0.1835675083680859,"score_spread":0.1664119577893899,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}