{"id":"W4384924210","doi":"10.1371/journal.ppat.1011510","title":"Genomic and phenotypic evolution of nematode-infecting microsporidia","year":2023,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Division of Integrative Organismal Systems; Canadian Institutes of Health Research; University of Toronto; Alfred P. Sloan Foundation; National Institutes of Health; National Science Foundation","keywords":"Microsporidia; Biology; Genome; Nematode; Phylogenetic tree; Phylogenetics; Caenorhabditis; Genetics; Evolutionary biology; Intracellular parasite; Phylum; Gene; Spore; Microbiology; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001350555,0.0002002913,0.0001886636,0.0008457659,0.0002209036,0.0002618728,0.0001921685,0.0003973896,0.0007525685],"category_scores_gemma":[0.000345483,0.0001625579,0.0002597413,0.0005136827,0.000212697,0.0001916115,0.000386458,0.0004047994,0.0002528888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002256277,"about_ca_system_score_gemma":0.0001255121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007194335,"about_ca_topic_score_gemma":0.001099101,"domain_scores_codex":[0.9998795,0.00001713495,0.000008094431,0.00004818584,0.00002425516,0.00002283961],"domain_scores_gemma":[0.9997107,0.00008729049,0.0000839731,0.00002289662,0.00003664674,0.00005835221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001415502,0.00002508819,0.02083262,0.0000589728,0.00002229616,0.0001568681,0.0001768284,0.0001886548,0.9738573,0.0001336457,0.00004301498,0.004363139],"study_design_scores_gemma":[0.000006955726,0.0001493065,0.969687,0.00001368891,0.00003389829,0.0008701808,0.0001732093,0.0008246548,0.02618895,0.0001107711,0.001924443,0.0000169747],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977308,0.0002724582,0.0005134197,0.00001911414,0.000002836949,0.000006166771,0.000894313,0.00001162567,0.0005492301],"genre_scores_gemma":[0.9946647,0.0002496357,0.001707094,0.00006262404,0.000006734798,0.00001571253,0.002662938,0.0000244909,0.0006060272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008457659,"threshold_uncertainty_score":0.002517581,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01360512813968893,"score_gpt":0.2360883884167762,"score_spread":0.2224832602770872,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}