{"id":"W4384926396","doi":"10.1126/science.adg6605","title":"Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1","year":2023,"lang":"en","type":"article","venue":"Science","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; BlueDot (Canada)","funders":"Directorate for Biological Sciences; National Institutes of Health; University College London Hospitals NHS Foundation Trust; University of Brighton; European Commission; Natural Environment Research Council; Vlaamse regering; University of Oxford; Biotechnology and Biological Sciences Research Council; Wellcome Trust; University of Southampton; University College London; King's College London; University of St Andrews; University of Exeter; Fonds De La Recherche Scientifique - FNRS; University of East Anglia; Royal Marsden NHS Foundation Trust; Rockefeller Foundation; Medical Research Council; Department of Health and Social Care; National Institute of Allergy and Infectious Diseases; Agence Nationale de la Recherche; University Hospital Southampton NHS Foundation Trust; King's College Hospital NHS Foundation Trust; UK Research and Innovation; Fogarty International Center; Fonds Wetenschappelijk Onderzoek; Nvidia; Advanced Micro Devices; National Institute for Health and Care Research; Bill and Melinda Gates Foundation","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Sars virus; Coronavirus disease 2019 (COVID-19); Dynamics (music); Biology; 2019-20 coronavirus outbreak; Genetics; Virology; Computational biology; Medicine; Physics; Pathology; Disease; Outbreak; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002698985,0.0001644675,0.0002055989,0.0008292581,0.0002279294,0.0005148339,0.000127466,0.0002541457,0.001994946],"category_scores_gemma":[0.001073106,0.0001224776,0.0002660598,0.00116974,0.000165361,0.0002152351,0.0003447087,0.0002730544,0.0003021499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003050893,"about_ca_system_score_gemma":0.0002276833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008350114,"about_ca_topic_score_gemma":0.01474988,"domain_scores_codex":[0.9997945,0.00004288014,0.00001274842,0.00009614818,0.00001996311,0.00003373342],"domain_scores_gemma":[0.9993545,0.0001813666,0.0002442522,0.00005623229,0.00007076171,0.00009287048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003030378,0.00004035851,0.9417562,0.00009735484,0.0001933508,0.0003041052,0.0008692933,0.001232229,0.04535923,0.0004673776,0.000572752,0.008804664],"study_design_scores_gemma":[0.000005231688,0.00005245389,0.9961048,0.00001094757,0.00003195721,0.0001921469,0.0003214239,0.001137054,0.0007374184,0.0001134577,0.001288714,0.00000431666],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969705,0.0001412457,0.0004272285,0.00004029215,0.000002189755,0.000004791289,0.001879898,0.000007182356,0.0005267262],"genre_scores_gemma":[0.9962451,0.00009334947,0.0006383313,0.00003163879,0.000003375467,0.000005946464,0.002613202,0.000005789822,0.0003632374],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008350114,"threshold_uncertainty_score":0.01660299,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08045848694983246,"score_gpt":0.4136649791627308,"score_spread":0.3332064922128983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}