{"id":"W4385154653","doi":"10.1093/gigascience/giad051","title":"A new haplotype-resolved turkey genome to enable turkey genetics and genomics research","year":2022,"lang":"en","type":"article","venue":"GigaScience","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Grand River Hospital","funders":"Southwest University; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Haplotype; Genomics; Genome; Human genetics; Genetics; Biology; Computational biology; Gene; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006709398,0.0001189472,0.0001059298,0.0001038342,0.0007075997,0.0001037436,0.0005442455,0.00004684189,0.000143437],"category_scores_gemma":[0.00005323664,0.0001263222,0.00003590761,0.0003366636,0.0001061517,0.000006121678,0.001170017,0.0001553181,0.0000263191],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007202158,"about_ca_system_score_gemma":0.0004490006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000384619,"about_ca_topic_score_gemma":0.0000415785,"domain_scores_codex":[0.9984376,0.00009463988,0.0001754861,0.0004964763,0.0003194122,0.0004763212],"domain_scores_gemma":[0.9991934,0.00001497586,0.00003669917,0.0004226234,0.00009077505,0.0002415767],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004595504,0.00003279796,0.0008276662,0.000007848173,0.00001365964,0.000005389113,0.001257483,0.008615312,0.983416,0.0008188603,0.003762125,0.0011969],"study_design_scores_gemma":[0.0005034406,0.001097728,0.004776665,0.000003754306,0.00001165335,0.0001036611,0.002038508,0.0006389922,0.08822603,0.001373277,0.9007902,0.0004361613],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940013,0.001279737,0.001973322,0.0005754678,0.0001735288,0.0002815697,0.0000548375,0.00001293075,0.001647321],"genre_scores_gemma":[0.984345,0.0001172734,0.007161313,0.0003931433,0.0002160956,0.00005438596,0.00002997773,0.00001949848,0.007663331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.897028,"threshold_uncertainty_score":0.5442356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02705363351294917,"score_gpt":0.2758492135263816,"score_spread":0.2487955800134324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}