{"id":"W4385156837","doi":"10.1186/s40168-023-01599-7","title":"Microbiota perturbation by anti-microbiota vaccine reduces the colonization of Borrelia afzelii in Ixodes ricinus","year":2023,"lang":"en","type":"article","venue":"Microbiome","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Collectivité de Corse; Ministerstvo Zdravotnictví Ceské Republiky; Grantová Agentura České Republiky; Agence Nationale de la Recherche","keywords":"Biology; Borrelia afzelii; Borrelia; Ixodes ricinus; Colonization; Microbiology; Ixodes; Medical microbiology; Ricinus; Lyme disease; Virology; Borrelia burgdorferi; Tick; Immunology; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004058124,0.0003434585,0.0004834592,0.0005376977,0.0002494171,0.00004515302,0.0005014197,0.0003606403,0.0004145188],"category_scores_gemma":[0.0001797907,0.0002772053,0.000150591,0.001888273,0.0002663831,0.0001571764,0.0001915558,0.0002946673,0.0008297286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001499801,"about_ca_system_score_gemma":0.0001098549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004915542,"about_ca_topic_score_gemma":0.0001012981,"domain_scores_codex":[0.997809,0.0003213326,0.000696055,0.0005387513,0.00004448717,0.0005904047],"domain_scores_gemma":[0.9987574,0.0001986022,0.0003351394,0.0004887818,0.000194327,0.00002580387],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006875218,0.0002472281,0.004774503,0.00004214403,0.0001143684,0.000003860766,0.0004969784,0.00004595589,0.8294553,0.00003521773,0.1643618,0.0003538985],"study_design_scores_gemma":[0.001841796,0.0001694857,0.07754255,0.0001183575,0.00009043442,0.00009779313,0.0002601694,0.00001602571,0.8839046,0.00004064488,0.03553772,0.0003803984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908416,0.005028698,0.00001905058,0.001536293,0.001031835,0.0006239082,0.0005717208,0.0002233704,0.0001235274],"genre_scores_gemma":[0.9935053,0.0004317762,0.00001491219,0.0002386049,0.00003810063,0.00003277111,0.001834636,0.00005269583,0.003851202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1288241,"threshold_uncertainty_score":0.999968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006683231256499307,"score_gpt":0.2280761514693984,"score_spread":0.2213929202128991,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}