{"id":"W4385220719","doi":"10.1101/2023.07.21.550109","title":"Genomic epidemiology of European <i>Aspergillus fumigatus</i> causing COVID-19-associated pulmonary aspergillosis in Europe","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Pfizer Healthcare Ireland; Wellcome Trust; Medical Research Council; Canadian Institute for Advanced Research; Natural Environment Research Council; Gilead Sciences; Pfizer","keywords":"Aspergillus fumigatus; Biology; Population; Genotype; Microbiology; Aspergillosis; Virology; Molecular epidemiology; Genetics; Immunology; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005295966,0.0002585418,0.0002723698,0.001426497,0.0002231994,0.0007214349,0.0002049703,0.0004009121,0.001235753],"category_scores_gemma":[0.000857064,0.00008375313,0.0003859976,0.001290841,0.0002951698,0.0001478929,0.0004482853,0.0001953695,0.0002170116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002276208,"about_ca_system_score_gemma":0.0001712559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00374394,"about_ca_topic_score_gemma":0.001880125,"domain_scores_codex":[0.9995555,0.000104857,0.00005602144,0.0001584507,0.00005882396,0.00006629309],"domain_scores_gemma":[0.9993187,0.0001015977,0.0002780866,0.00004881817,0.0001308229,0.0001220418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004777982,0.00007119188,0.9416457,0.0000835406,0.0002856294,0.001525376,0.0005024698,0.0003813372,0.03718892,0.0003378056,0.0004809631,0.01701929],"study_design_scores_gemma":[0.00000924159,0.0001116202,0.9947955,0.00002436802,0.00004324189,0.001836537,0.0003176764,0.0001624722,0.001012545,0.00004214724,0.001639853,0.000004770674],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978781,0.0004930091,0.0004398043,0.00004292192,0.000005324439,0.00001003115,0.0004167442,0.000006778583,0.0007072104],"genre_scores_gemma":[0.9984542,0.0002155828,0.0002943401,0.00005203007,0.000008397548,0.000004745615,0.0008506809,0.000003380746,0.0001164881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00374394,"threshold_uncertainty_score":0.007444322,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05450225002199209,"score_gpt":0.2869395785922238,"score_spread":0.2324373285702317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}