{"id":"W4385230443","doi":"10.1128/mra.00427-23","title":"Genome sequences of 11 <i>Alkalihalobacillus clausii, Bacillus safensis,</i> and <i>Escherichia coli</i> bacteriophages isolated from bovine rumen and vagina","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"North Dakota Agricultural Experiment Station","keywords":"Lytic cycle; Escherichia coli; Biology; Microbiology; Genome; Bacillus (shape); Virology; Gene; Genetics; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002027805,0.0003179089,0.0004301931,0.00007647563,0.0002508228,0.00005395937,0.0002607538,0.000196173,0.00106965],"category_scores_gemma":[0.00001360428,0.0002979269,0.00006060301,0.0003592265,0.0006914121,0.0002048821,0.0006128672,0.0001870026,0.000277746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000838606,"about_ca_system_score_gemma":0.00001463659,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001232974,"about_ca_topic_score_gemma":0.0003453458,"domain_scores_codex":[0.9981775,0.0001330327,0.0004435725,0.0006507897,0.0000804063,0.0005147218],"domain_scores_gemma":[0.9992518,0.000066971,0.0002217507,0.0003047567,0.00002430418,0.0001304582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001048869,0.00005757575,0.00944041,0.00001442768,0.00006142652,0.00002294691,0.0007096107,0.00001115812,0.9872636,0.000001110077,0.001746887,0.0005659675],"study_design_scores_gemma":[0.001307836,0.0006239581,0.09337995,0.00006828488,0.000112282,0.00009337303,0.0006439229,0.00005075328,0.01417465,0.0000303555,0.8889359,0.0005787318],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99507,0.0004299684,0.00002401454,0.0005093876,0.0001504345,0.000294676,0.002833725,0.00007932545,0.0006084443],"genre_scores_gemma":[0.9934443,0.000585521,0.0003773371,0.0009905539,0.000047799,0.0000197115,0.002079294,0.00003282605,0.002422686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9730889,"threshold_uncertainty_score":0.9999473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009024278874834668,"score_gpt":0.2135882811442735,"score_spread":0.2045640022694388,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}