{"id":"W4385233671","doi":"10.1186/s40168-023-01594-y","title":"Increased genital mucosal cytokines in Canadian women associate with higher antigen-presenting cells, inflammatory metabolites, epithelial barrier disruption, and the depletion of L. crispatus","year":2023,"lang":"en","type":"article","venue":"Microbiome","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Biology; Immunology; Antigen; Epithelium; Sex organ; Medical microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002372,0.0004288293,0.0003629503,0.0009116165,0.001689879,0.0007538871,0.0003585142,0.0003569569,0.002467526],"category_scores_gemma":[0.0006089601,0.0002071214,0.0004019018,0.001497756,0.00042966,0.0001188968,0.0003933837,0.000371885,0.0001715675],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004541246,"about_ca_system_score_gemma":0.004845085,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.8473361,"about_ca_topic_score_gemma":0.8869548,"domain_scores_codex":[0.9997386,0.00001406963,0.000009637611,0.00005767454,0.0001075238,0.00007249699],"domain_scores_gemma":[0.999774,0.00001778399,0.00006522108,0.000009757812,0.00009033522,0.00004294699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006863446,0.00006381248,0.9372363,0.000245786,0.0002055853,0.0005392563,0.001070781,0.0002008697,0.04185864,0.0001153112,0.0009577996,0.01681948],"study_design_scores_gemma":[0.000003896048,0.00004574237,0.9960307,0.00001927598,0.00006103735,0.00029969,0.0006886323,0.0002033895,0.001524012,0.0000284594,0.001086869,0.000008152885],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939377,0.001209956,0.0003322931,0.0002132529,0.00001024702,0.00003759571,0.002818253,0.00001640489,0.001424356],"genre_scores_gemma":[0.9961799,0.0005139848,0.0007697561,0.0001376138,0.000003730268,0.00001461695,0.001071467,0.000004876944,0.001303989],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8473361,"threshold_uncertainty_score":0.3071259,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007507745560266448,"score_gpt":0.2348576629564521,"score_spread":0.2273499173961857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}